Serratia marcescens SM39: SM39_2512
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Entry
SM39_2512 CDS
T03592
Name
(GenBank) ECF-family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
smar
Serratia marcescens SM39
Pathway
smar02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SM39_2512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smar03021
]
SM39_2512
Transcription machinery [BR:
smar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SM39_2512
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
PAX
Sigma70_ECF
HTH_28
HTH_29
PhyR_sigma-like
Fe_dep_repress
HTH_69
Rv2175c_wHTH
MA3
HTH_10
GerE
DUF1759
Motif
Other DBs
NCBI-ProteinID:
BAO34514
LinkDB
All DBs
Position
complement(2568356..2568868)
Genome browser
AA seq
170 aa
AA seq
DB search
MARKEAAAANGFAQQLYLEHHSWLCHWLRQKVGCAHHAEDLAQDTFISILLSPQLLAIRQ
PRPFLATVARRLVANYYRRKTIEESYLQALSELPAIEAPSPEVRQQTLEMLEQLDQALDG
LPAHVREAFLLAHLQGMRYCDIAERLRVSTSSVKQYLQRANLHCFFALAA
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaaagaggccgcggcagccaacgggtttgctcaacagctttaccttgagcac
cacagttggctatgccattggctgagacagaaggtcgggtgcgcgcatcacgccgaagac
ctggcgcaggatacgttcatcagtattttactgagtccgcagttgcttgccattcggcaa
ccacgccccttcctggcgaccgtggcgcgccggctggtggcgaattattaccgacgtaaa
acaatcgaagagagctatctgcaggccttgagcgagctgcctgcgatcgaggcgccctcg
ccggaggtccgtcaacaaaccctcgaaatgctcgaacagttggatcaggcgttggacgga
ttgccggcgcacgttcgcgaggctttcctgttggcgcacctgcagggcatgcgttattgc
gacatcgctgaacgtttgcgggtgtcgaccagttcggtgaaacaatatctgcagcgcgcc
aatttgcactgtttctttgcattggcggcgtaa
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integrated database retrieval system
