Serratia marcescens SM39: SM39_3277
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Entry
SM39_3277 CDS
T03592
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
smar
Serratia marcescens SM39
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smar03009
]
SM39_3277 (srmB)
Enzymes [BR:
smar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SM39_3277 (srmB)
Ribosome biogenesis [BR:
smar03009
]
Prokaryotic type
rRNA helicases
SM39_3277 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAO35241
UniProt:
A0AAT9EHQ5
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All DBs
Position
3374105..3375427
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AA seq
440 aa
AA seq
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MTATTFSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVQHKTALLI
HLLQQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVN
VLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKVGRYLNEPLKARVIDELRPKTKVPNEKSNGKPSKKVLAKRAEDKAKNKEKAKVKVRHR
DAKNVGKRRQAKAKPAGDAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccactttttccgaactcgaactcgatgatcgcctgatcgacgcgctgcgc
gacaaaggctacgatcgccccaccgccattcaggccgctgcgatcccgccggcgatggac
gggcgcgacgtcttaggttcggctccgaccggcaccggcaaaaccgccgccttcctgctg
cccgtgctgcagcacctgctggactttccacgcaaaaaatccggcccgccgcgcgtgctg
atcctgacgccaacgcgtgaactggcgatgcaggtcgccgatcaggcgcgtgaattggct
gctcatacctcgctggatatcgccaccatcaccggcggcgtcgcttacatgaaccacgcg
gaagtgttcagcgaaaaccaggacgtggtggtcgccaccaccggccgtttgctgcaatac
attaaagaagagaacttcgactgccgcgcggtggaaaccctgatcctcgacgaagccgac
cgcatgctcgacatgggcttcgcgcaggacatcgaaaccatctccgccgaaacccgctgg
cgcaaccagacgctgctgttctccgccacgctggaaggcgaagcgatccgcgaattcgcc
gagcgcatcctgaaagagccggtggaagtggaggccgatccgtcgcgccgcgaacgcaaa
aagatcctgcagtggtactaccgcgccgatgacgtgcagcacaaaaccgcgctgctgatc
cacctgctgcagcagccggacgtgcagaaatcggtgatcttcgtgcgcaaacgcgagcgc
gtgcacgagctggccacctggctgcgcgaagcgggcattaacacctgctatctcgaaggt
gaaatggtgcaggccaaacgcaacgaagcggttaaacgcatgatggatggccgggttaac
gtgctggtggccaccgacgttgccgcacgcggcctggatatcctcgatatcacccacgtg
ttcaacttcgacatgccgcgcacggcggacacctacctgcaccgcatcggccgtaccggc
cgcgccgggcgcaaaggcaccgccatttcgctggtggaagcgcacgaccatctgctgctg
ggcaaagtgggccgttacctgaacgagccgctgaaagcgcgcgtgatcgacgaactgcgg
ccaaaaaccaaggtgccgaatgagaagagcaacggcaagccgtcgaaaaaagtgctggcc
aaacgcgcggaagataaagcgaagaacaaagaaaaggccaaggtaaaagtgcgccatcgc
gacgccaaaaacgtcggcaaacgccgtcaggcgaaggccaaaccggccggcgacgcggaa
taa
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