Serratia marcescens SM39: SM39_3373
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Entry
SM39_3373 CDS
T03592
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03030
DNA replication
smar03430
Mismatch repair
smar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SM39_3373 (dnaE)
03430 Mismatch repair
SM39_3373 (dnaE)
03440 Homologous recombination
SM39_3373 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smar03032
]
SM39_3373 (dnaE)
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_3373 (dnaE)
Enzymes [BR:
smar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SM39_3373 (dnaE)
DNA replication proteins [BR:
smar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SM39_3373 (dnaE)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SM39_3373 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAO35337
UniProt:
A0AAT9ENR4
LinkDB
All DBs
Position
complement(3471634..3475122)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPMIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQHFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMYPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgtccacagtgactactccatgattgatgga
ttggccaagacggcaccgctggtgaaaagagccgccgcgttagccatgcctgctctggca
atcaccgatttcaccaacctgtgtggattggtgaagttctacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggatttccatgtgcaaagcgaagagctgggcgacgag
ctggctcagctgacggtgctggccagcaacaacgaaggctaccagaacctgacgctgctg
atttcccgcgcctatcagcgcggctacggcgccgccggcccgatgatcgatcgcgactgg
ctgattgaacatcgcgaagggctgattctgctctccggcgcgcgtcagggcgacgtcggc
aagtttctgctgcgcggcaaccaggcgcaggtggatcagtgtctggacttctaccagcag
cacttcccggactgttactacctggaactgattcgcaccggccgcccggacgaagagaac
tacctgcatgcggcagtggcgctcgccaccgagcgcggtttgccggtggtggccaccaac
gacgtgcgcttcctggtggaagatgacttcgacgcccatgaaattcgcgtcgccatccac
gacggctttacgctggacgatcccaagcggccgcgcaactacagcccgcagcaatacatg
cgcagcgaagacgagatgtgcgaactgttcgccgacatccccgaagcgctgctgaacagc
gtcgagatcgccaagcgctgcaacgtcaccattcgcctcggcgaatacttcctgccgcag
ttcccgaccggcgacatgagcaccgaggacttcctggtactcaaatcgaaagaggggctg
gaagagcgtctcgagttcctgttccccgatcctgaagtgcgcgcgcagcgccgcccggaa
tacgacgagcgtctggacgtcgagctgaaggtgatcaaccagatggggttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggacaacaacgtgccggtgggcccg
gggcgcggttccggcgccggttcgctggtggcctatgcgttgaaaatcaccgacctcgat
ccgctggagttcgacctgctgttcgaacgtttcctgaacccggaacgtgtctcgatgccc
gacttcgacgtcgacttctgcatggagaagcgcgaccaggtaattgagcacgtggcggag
atgtacggccgcgaagcggtatcgcagatcatcaccttcggcaccatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctggggcacccgtacggcttcgtcgatcgcatctcc
aagctggtgccgccggatccgggcatgacgctggaaaaagccttcgctgccgaaccgcag
ctgccggaaatttacgaggcagacgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgcaacgccggtaaacacgccgggggcgtggtgatagcgccgacc
aaaatcaccgacttcgcgccgctgtactgcgacgccgaagggcagcacccggtgacccag
ttcgataagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggtctgcgc
accctgaccatcatcgactgggcgctggagatgatcaacgcccggcgcgccaaaaccggg
ctagagccgatcgacatcgccgccattccgctcgacgacaagaaaagcttcgatatgctg
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgtctgaagcccgactgcttcgaagacatgatcgcactggtggcgctgttccgtccg
gggccgctgcagtcggggatggtggataacttcatcgaccgcaagcacggccgcgaagag
atctcctacccggacatccagtggcagcacgagtcgctcaagccggtgctggaacccacc
tatggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgctggcgggctat
acgctgggcggcgcggacatgctgcgccgtgcgatgggtaaaaagaacccggtcgaaatg
gctaagcagcgcggcggctttgaagatggcgccaaagcgcgcggcatcgacggcgaactg
tcggtgaaaatcttcgacctggtggagaaattcgccggatacggcttcaacaaatcgcac
tccgccgcctatgcgctggtgtcgtatcagacgctgtggctgaaagcgcactacccggcc
gagtttatggcggcggtgatgaccgccgatatggacaacaccgataaggtggtggggctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggacatcaacagcggcctg
tatcacttccacgtcaacgacgacggcgagatcgtttacggcatcggcgccatcaagggc
gtgggggaagggccgatcgaagccatcatcgaggcgcgcaacagcggcgagcagggttac
ttcaaagacctgttcgatctctgcgcgcgctcagacatcaagaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggcgcgttcgatcgcctcgggccgcaccgcgccgcgctg
atgaattcgctcggcgacgcgttgaaagcggcggatcagcatgcgaaagccgaagcgatc
ggccaggtggatatgtttggcgtgctggcggaagcgccggagcaggtggagcaatcctac
gccaatatcgcgccctggccggagcaggtggtgctggacggggaacgggagacgctgggg
ctgtacctgaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagacatgtacccgacggatcggggcaaaatgaccaccgccgtcggg
ctggtggtcgccgcgcgggtgatggtgaccaagcgcggcaaccgcatcggcatctgtaca
ttggatgaccgttcgggccgcctggaagtgatgttattcaccgaagcgttagaaaaatac
cagcatttgttggaaaaagaccgtatccttatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgggaa
aaatacgctcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgagccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatcgacttgcggacgttggtaggcaatgagcaggtggacttggaa
tttgactaa
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