Serratia marcescens SM39: SM39_3896
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Entry
SM39_3896 CDS
T03592
Symbol
uvrA
Name
(GenBank) ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
KO
K03701
excinuclease ABC subunit A
Organism
smar
Serratia marcescens SM39
Pathway
smar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SM39_3896 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_3896 (uvrA)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SM39_3896 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SM39_3896 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
AAA_23
NACHT
nSTAND3
Viral_helicase1
cobW
ScfRs
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
BAO35837
UniProt:
A0AAT9F1L7
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All DBs
Position
4030043..4032871
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AA seq
942 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHHVPLAAQTVSQMVDNVLSQPEGKRLMLLAPVVKDRKGEHTKTLENLAAQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDMAQRLAESFETALELSGGTAVVADMDDE
KADELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVVQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYEFDVEAPFNTLSADVQKAVLSGSGKESIEFKY
INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCHGTRLREEARN
VFVEDTTLPEISDLSIGHAMTFFQNMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTVDDIMAQPDSLTGQFLSGKREIAI
PAQRVQADPTKVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPFREVTGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE
SRSRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEVKY
KGKSIHEVLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVAGTPETVAECEKSHTARFLKPLLKP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggacaatatcgaagttcgtggtgctcgaacccataacctgaaaaacatcaacctgatt
atcccgcgtgacaaactgatcgtcgtcaccggcctgtccggttccggcaagtcatcgctg
gctttcgatacgctgtatgccgaagggcaacgccgctacgtcgaatcgctctccgcctat
gcgcgccagttcctgtcgctgatggaaaaaccggacgtcgatcatatcgagggcctgtcg
ccggcgatctccatcgagcagaaatccacctcgcacaacccgcgatccacggtcggcacc
atcaccgaaatccacgactacctgcgcctgctgttcgcccgcgtcggcgagccgcgctgc
ccggatcaccatgtgccgctggcggcgcaaaccgtcagccagatggtcgataacgtgctg
agccagccggaaggcaaacgcctgatgctgctggcgccggtggtgaaagaccgcaagggc
gagcacaccaaaacgctggaaaacctggccgcccagggctatatccgcgcgcgcatcgac
ggtgaagtgtgcgatctgtccgatccgccgaagctggagctgcagaagaaacacaccatc
gaagtggtggtcgaccggttcaaggtgcgcgaggacatggcgcagcgcctggccgaatcg
ttcgaaaccgcgctggagctgtccggcggcaccgcggtggtggcggatatggacgacgag
aaagcggacgagctgctgttctccgccaacttcgcctgcccgatctgcggctacagcatg
cgcgagctggaaccgcgcctgttttccttcaacaacccggctggcgcctgcccgacctgc
gacggcctgggcgtgcagcagttcttcgatccggatcgcgtggtgcaaaaccccgagctg
tcgctggccggcggcgcgatccgcggctgggatcgccgcaacttctattacttccagatg
ctgcgctcgctggcggagcactatgagttcgatgtcgaagcgccgttcaacaccctgagc
gccgacgtgcagaaggcggtgctgagcggctccggcaaagagtcgatcgaattcaaatac
atcaacgatcgcggtgataccaccgtgcgccgtcatccgttcgaaggcgtgctgcacaac
atggagcgccgctataaagagaccgaatccagcgcggtgcgcgaagaattggcgaagttc
atcagcaatcgcccttgcgcctcgtgtcacggcacccgcctgcgcgaagaagcgcgcaac
gtgttcgtcgaagacaccacgctgccggagatttccgatctgagcatcggccatgcgatg
accttcttccagaacatgaagctcagcggccaacgcgccaagatcgccgaaaaagtgctg
aaagagatcggcgatcgcctgaagttcctggtgaacgtcggcctgaactacctgtcgctg
tcccgctcggcggagacgctctccggcggcgaagcgcagcgcatccgtctggccagccag
atcggcgccggcctggtgggcgtgatgtacgtgctggatgagccgtcgatcggcctgcac
cagcgcgacaacgagcgcctgctggaaacgctgatccacctgcgcaacctcggcaacacg
gtgatcgtggtggagcatgacgaagacgccatccgcgccgccgaccacgtgatcgacatc
ggccccggcgccggcgtacacggcggccaggtggtggcggaaggcaccgtcgacgacatc
atggcgcagccggactcgctgaccggccagttcctcagcggcaagcgcgagatcgccatt
ccggcgcagcgcgtgcaggccgatccgaccaaggtgctgaagctgagcggcgcgcgcggc
aacaacctgaaggacgtgacgctgacgctgccggtcggtctgtttacctgcatcaccggc
gtttccggctccggcaaatcgacgctgatcaacgatacgctgttcccgatcgcccagcgc
cagctcaacggcgccaccatcgccgaaccggcgccgttccgcgaagtgaccggcctggag
catttcgacaaggtgatcgacatcgatcaaagcccgatcggccgcacgccgcgctccaac
ccggccacctacaccggcatttttaccccggtgcgcgagctgttcgccggcgtgccggaa
tcgcgcagccgcggttatacgccgggccgtttcagcttcaacgtcaagggcgggcgctgt
gaagcctgccagggcgacggggtgatcaaggtcgagatgcacttcctgccggacatctac
gtgccgtgcgaccagtgcaagggcaagcgctataaccgcgaaacgctggaagtgaagtac
aagggcaagagcatccacgaagtgctggagatgaccatcgaagaagcgcgtgagttcttc
gacgcagtgccggcgctggcgcgcaagctgcagaccctgatggatgtcggcctgtcgtac
atccgtctcggccagtcggccaccacgctctccggcggtgaggcacagcgcgtcaagctg
gcgcgcgagctgtcgaaacgcggcaccggccagacgctgtatatcctcgacgaaccgacc
accggtctgcacttcgccgatatccagcagctgttggcggtgctgcatcagctgcgcgat
cagggcaacaccatcgtggtcatcgagcataacctggacgtgatcaagaccgccgactgg
atcgtcgatctggggccggaaggcggcagcggcggcggcgaaatcctggtcgccggcacg
ccggaaacggtggccgagtgtgaaaaatcgcacaccgcacgcttcctgaaaccgctgttg
aagccgtag
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