Serratia marcescens SM39: SM39_4777
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Entry
SM39_4777 CDS
T03592
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM39_4777 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smar03019
]
SM39_4777 (pnp)
03016 Transfer RNA biogenesis [BR:
smar03016
]
SM39_4777 (pnp)
Enzymes [BR:
smar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SM39_4777 (pnp)
Messenger RNA biogenesis [BR:
smar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SM39_4777 (pnp)
Transfer RNA biogenesis [BR:
smar03016
]
Prokaryotic type
tRNA degradation factors
SM39_4777 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
S1_RRP5
KH_2
KH-I_KHDC4-BBP
DUF4172
UPF0181
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BAO36692
UniProt:
A0AAT9F5F1
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All DBs
Position
4981106..4983223
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AA seq
705 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA
GTAGAVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNE
ALQARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLAQDETLDAGEIQDILGNL
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEVDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAMAPEASSPAPEAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgctgacaccgatcattcgcaaattccagtatggccagcataccgtcaccatcgaaacc
ggtatgatggctcgtcaggccaccgccgccgttatggtgagcatggatgacaccgccgta
ttcgttaccgtcgttggccagaaaaaagccaagccgggccagagcttcttcccgctgacc
gttaactaccaagagcgtacctacgccgccggccgcatcccgggcagcttcttccgtcgc
gaaggccgtccgagcgaaggcgagaccctgacttctcgtctgatcgaccgtccgatccgt
ccactgttcccggacaacttcctgaacgaagttcaggtgatcgcgaccgtggtttccgtt
aacccgcaggtgaacccggacatcgttgcgatgatcggtgcttccgcagccctgagcctg
tccggtattccgttcaacggcccaatcggcgccgcgcgcgtgggttacatcaacgatcag
tacgtgctgaacccgacgaccgatgagctgaaagaaagccgtctggatctggtggttgcc
ggtaccgccggcgcggtgctgatggtggaatccgaagcggacgtgctgagcgaagatcag
atgctgggcgccgtggtgttcggccacgaccagcagcaagtggttatcgaaaacatcaac
gcgctggttgccgaagccggcaaaccgaagtgggattggcaggcgcctgcggtcaacgaa
gcgctgcaagcgcgcgtggctgaattggccgaagctcgcctgggcgacgcttaccacatc
accgaaaaacaagagcgttacgctcaggttgacgcgatcaaagacagcgttgttgaaacc
ctgctggcgcaggacgaaacgctggacgccggcgaaatccaggacatcctgggcaacctg
gagaaaaacgtggtgcgcagccgcgtactgcgtggcgagccgcgtatcgacggccgtgaa
aaagacatgatccgtggcctggacgtgcgcaccggcgtactgccgcgcacccacggttcc
gcgctgttcacccgtggcgaaactcaggcgctggttaccgcgaccctgggcaccgcgcgc
gatgcgcagaacctggacgagctgatgggcgagaagaccgacagcttcctgttccactac
aacttccctccgtactccgtgggcgaaaccggcatggtcggttctcctaagcgtcgtgaa
atcggtcacggtcgcctggcgaaacgcggcgtattggctatgatgcctaaaccggaagat
ttcccgtacaccgttcgcgtggtgtctgaaatcaccgaatccaacggttcttcttccatg
gcctccgtgtgcggcgcgtctctggcgctgatggacgccggtgtgccaatcaaggctgcc
gttgcgggtatcgcgatgggcctggtgaaagaagtcgacaactttgtggttctgtccgac
attctgggtgacgaagatcacctgggcgacatggacttcaaagtggccggtagccgcgac
ggtatcaccgcgctgcagatggacatcaaaatcgaaggcatcacccgcgaaatcatgcag
gtggctctgaaccaggccaagggcgcgcgtctgcacatcctgggcgtgatggaacaggct
atcagcaccccgcgtggcgatatctccgaattcgcaccgcgtattcatactatccgcatc
aacccggataagattaaagacgtgatcggtaagggcggttccgttatccgcgcgctgacc
gaagagactggcactaccatcgaaatcgaagatgatggtacagttaaaatcgctgcgacc
gacggggagaaggcgaaattcgctatccgtcgtatcgaagagatcacggcagagatcgaa
gtgggccgtatctaccagggtaaagtgacccgtatcgttgatttcggcgcgttcgtcgct
atcggcggtggtaaagaaggtctggtacacatttctcagatcgccgacaagcgcgtcgag
aaagtgaccgactatctgcagatgggtcaggaagtgccggttaaggtactggaagttgac
cgtcagggccgcgtgcgtctgagcatcaaagaagcgatggcgccggaagcgagttcacct
gcgcctgaagcagaataa
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