Candidatus Sulfurimonas marisnigri: HUE87_03105
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Entry
HUE87_03105 CDS
T07564
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smas
Candidatus Sulfurimonas marisnigri
Pathway
smas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE87_03105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smas03019
]
HUE87_03105
Enzymes [BR:
smas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUE87_03105
Messenger RNA biogenesis [BR:
smas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUE87_03105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
AAA_22
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QOY55240
UniProt:
A0A7S7M1E6
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All DBs
Position
599310..600611
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AA seq
433 aa
AA seq
DB search
MSFEKLGVMKQLLGAINDLGYINPTTVQTRAIPLVLAKSDIFATAQTGTGKTAAFGLPMI
QRLRANSDDVNRLIRGVILSPTRELSIQIHEDMKSFAKYMNLSIALLVGGKDIEAQQKIL
KKGVDIVIATPGRMLEHAEGGLSLKGVEIFVLDEADRMLDMGFVKEIRKIHPMLPKRHQT
LLFSATYSEKVRKLSKLLLTKPAFIEASKKNSTVDTINQKVYLVDRERKAELLAYIIGSR
NFRQVLVFTRTKASADQLVLELKKDGLKCGVIHGDKTQANRVKTLNDFKEGNITVLVATD
IASRGLDIEHLPYVINYELPSVPEDYIHRVGRTGRAGRDGEAISLIDIYEKYDIKEIERL
IGIKIPQETVEGFEPDPTIRRKDEDELKLKSEHKKAEKKRPTKKVAQKVTAKSIKTAKVV
KKTNKKRKTTKRD
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgaaaaactgggcgttatgaaacaacttcttggcgcaataaacgatttgggc
tatattaatcctactacagttcaaacaagagctattccattggtgttggccaagagtgac
atattcgcaacagctcagactggaactggtaaaactgctgcatttgggcttcctatgatt
caacgtcttcgcgccaactctgatgatgtaaacaggttgataagaggtgttatactatct
cctacccgtgaattgtcaattcaaatacatgaagatatgaaaagttttgcaaagtatatg
aatcttagcatagctcttttggttgggggaaaagatatagaggctcagcaaaaaatctta
aaaaagggtgttgatattgttatagcaactccaggaagaatgctcgaacatgcagagggt
gggctaagccttaaaggtgtagagatttttgtgctagatgaagcagatagaatgttagat
atgggttttgtaaaagagataagaaaaatacacccaatgcttccaaaaagacatcagact
cttcttttttcagcaacatacagcgagaaagttagaaaactctcaaagcttcttttaact
aaaccggcatttatagaagcatccaaaaagaactcgactgttgatacaattaaccaaaaa
gtttatctggtagaccgtgagagaaaagcggaactattggcttatataattggctcaaga
aactttagacaagttttagtatttactagaaccaaggcaagtgcagatcagcttgttctt
gagcttaaaaaagatggactaaagtgtggagtcatccacggtgacaaaactcaagccaac
cgcgtaaaaacgctcaatgatttcaaagaggggaatattacagtgctcgtggcaactgat
attgcttcacgtggtttagatattgaacacctcccttatgttataaattatgaactacca
tctgtaccagaagactatatccatagagtagggcgtacaggtcgtgctgggcgtgatggt
gaagcaatctcactaatagatatctatgaaaagtatgatataaaagagatagagagactt
atagggataaagattcctcaagaaactgttgagggttttgagccagaccctacaataaga
agaaaagatgaagatgagctaaagttaaagagtgagcataaaaaagcagagaaaaaacga
ccaactaaaaaagttgctcaaaaggttactgctaaatcaataaaaactgcaaaagttgta
aaaaaaaccaataaaaaaagaaaaacaaccaagcgtgattaa
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