Candidatus Sulfurimonas marisnigri: HUE87_05385
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Entry
HUE87_05385 CDS
T07564
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
smas
Candidatus Sulfurimonas marisnigri
Brite
KEGG Orthology (KO) [BR:
smas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smas03019
]
HUE87_05385 (hrpB)
Enzymes [BR:
smas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HUE87_05385 (hrpB)
Messenger RNA biogenesis [BR:
smas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HUE87_05385 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_19
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QOY55658
UniProt:
A0A7S7M271
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All DBs
Position
1053915..1056419
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AA seq
834 aa
AA seq
DB search
MKSLPINEVLEDIKSSLGTNSTLILQAPPGTGKSTLVPISLLSESWLGEKMIIMLEPRRV
AARMVATQMAKLLGEDVGDSVGYQVKMDSCYSKKTKILVVTEAILVRMLQADQTLSKVAL
VIFDEFHERSINSDLSLALSLQVQELLRDDLKILIMSATLNSQEISKLLESAPVITSQGK
AYEVEVNYLNINTKQPDSRSINTLVLSAILNSIKDDEGDILVFLPGVKEIKNLQNSLHVA
LKNKDISVLPLYSALGKKEQDRALQNSTCRKIILSTNIAQTSLTIEGVRVVIDTGLEKLS
RYNHSNAMDHLEMSFISKESAIQRSGRAGRVSNGKCYRLWHEGKVVLESTKPEILRSDLS
SLLLDLALWGVDDFNELKWLDIPNEKLIQESRVVLKELQMLDDSYKITLFGRQALSLGVH
PRFSYMILKANDMGYAYEASLLAALLSEKDIFKDSRTDSSILSRFIHLYEKDFDENYIHV
HRAREVLKQTDFFYSKLKKIKKVDKKSSVLNKDILAVLLLLAYPDRLAMQRAKNENRYKL
SNGKGAILHLEDSMFNEEFLVVPNLNANESDSFINLSMSISMQQIEKYFSDFIKQEESIN
YNKQNKKFDIRDNSYFLQLQLYSSVSNQSSKHNYKKLILELIKKEGLGLLTWSRKATSLM
ARVNFVNRHLELMFEDLSDERLLESLESWLEPYLDGVTTVKELESLDMYAILLALISWEN
QQRLEALAPLHVRVPSGSNIYIDYSDPNKPSVSVKIQEVFGLLEVPKILNSTIALQIHLL
SPGMRPIQITYDLKSFWQNSYVEVAKELRGKYKRHYWPENPYEAVATTKTKKYM
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctcccaataaatgaagtcttagaagatattaaaagctcactaggcaccaac
tcaacacttatactgcaagctcctcctgggaccggaaaaagtacacttgttccaatctct
ttacttagcgagtcttggcttggcgagaagatgataattatgcttgagccaagaagagtt
gcggctaggatggtagcaactcaaatggcgaaactcttgggtgaagatgtcggagatagc
gttggttatcaggttaaaatggatagttgttacagtaaaaaaacaaaaatccttgtagta
actgaagctatcttggttcgtatgcttcaagcagaccaaacactttcaaaagtggcttta
gttatttttgatgagtttcatgagagaagtattaacagcgacctctctttggctctgtct
ttgcaagttcaagagctactgcgagatgatttaaaaattttaataatgtcagcaacgctt
aactcacaagagatttcaaaactgctagagagtgctcctgtgatcacttcacaaggtaag
gcctatgaggtggaagttaattatttaaatataaatacaaagcagcccgacagcaggtcc
ataaacacgcttgtattgagtgcaattcttaactctattaaagatgacgagggggatatt
ttagtttttttacctggagtcaaagagataaaaaacttgcaaaactcactacatgtagct
ttaaaaaacaaagatatttcagttttgcctctatactcagcactaggtaaaaaagagcag
gatagagccttacaaaactctacctgtagaaaaattattctctcaactaacatagcccag
acatctttaaccattgagggtgtaagagttgttattgataccggtttagaaaaactatca
agatataaccactcaaacgccatggaccatctggagatgtcgtttatatctaaagaatca
gcaattcaaaggtcaggaagggctggacgtgtctcaaacggaaagtgctacagactttgg
catgaggggaaagtcgtgcttgagtcaacaaagcctgagatactaaggtcagatttaagt
tcactgcttttagaccttgctctgtggggagttgatgattttaatgaacttaaatggctt
gatattccaaatgagaagcttatacaagagagcagggttgttctaaaagagttgcaaatg
ttagatgactcctataaaatcactctctttgggagacaagctttgagtcttggagtgcat
ccccgcttctcttatatgattttaaaagccaatgatatggggtatgcatatgaggcctct
cttttggcagcacttttaagtgaaaaagatatttttaaagattcacgaacagacagtagt
atactatctaggtttatccatctttatgaaaaagattttgatgaaaactacatacatgta
cacagagcgagagaggttttaaaacagacggattttttttactctaaacttaaaaagatt
aaaaaagtggataaaaaaagttctgttttaaataaagatatattagcagtattacttctt
ttggcttatccagatagacttgcgatgcaaagagcaaagaatgaaaatagatataaactc
agtaatggcaaaggggcaatcctacatctagaagactctatgtttaacgaagagttttta
gttgtgccaaatctaaatgcaaacgaaagcgactcttttataaatttgagtatgagtata
tcgatgcaacagatagagaagtattttagcgattttataaagcaggaagagtctataaac
tacaacaaacaaaataaaaaatttgacataagagataacagctatttcttgcagttacag
ctttactcatctgtaagtaaccaaagctcaaaacacaactacaaaaaactgattttagag
ttaattaaaaaagagggcttgggacttcttacatggagtagaaaagcaactagcttaatg
gcaagggtaaactttgtaaacagacatttggagttgatgtttgaagatttaagcgatgag
agactacttgagagtttagagagttggctggagccgtatcttgatggtgtcactacggtt
aaagagcttgagagcttggacatgtatgcaattctcttggctttaatatcatgggagaat
caacagcgtttagaggctctcgctcctctacatgtaagagttccaagcggttcaaatatt
tatatagattactcagacccgaataagccatcggtaagtgttaaaattcaagaagttttt
ggactgcttgaggtgccaaagatactaaacagcactatagctttgcaaatccatcttttg
tcgccgggtatgcgacctattcaaataacatacgatttaaaaagcttttggcaaaactca
tatgttgaggtggcaaaagagcttagaggtaagtataaaagacattactggcctgaaaat
ccatatgaagcagttgccacgactaagacaaaaaaatatatgtaa
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