Candidatus Sulfurimonas marisnigri: HUE87_09850
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Entry
HUE87_09850 CDS
T07564
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smas
Candidatus Sulfurimonas marisnigri
Pathway
smas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUE87_09850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smas03400
]
HUE87_09850
Enzymes [BR:
smas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUE87_09850
DNA repair and recombination proteins [BR:
smas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUE87_09850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOY54179
UniProt:
A0A7S7RQ27
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All DBs
Position
complement(1945644..1948634)
Genome browser
AA seq
996 aa
AA seq
DB search
MSQNILFKYFNSKQSGDLELLICEDSKEAYELESVAKFFKRDVLVFPDFRAGFGDDLRVF
KEELHQLFSSLRAYYTSKKKPLVISPLKTLLFNLPKENLLNSTIIEFGEKIRLKNFKEQM
LFWGYNFVDMVQVEGEISFRGDIIDIYAPSSKMPIRISLFDDEIEQIKYFELESQRTQKD
ELDSFLITPAFYSLNEEEFNTLNKKIELSEFDSLVKDIASLGLWHLDESASNFLENKNVK
LIRNLDTLLVDAYALNNPTISRECFNLELLPEADDFKELVVVDIHTLLKVHKDKKVTIIA
SNEAVMKQAGLFELKNITEVYAPYILNILSKDELIISLNKPDKMRRRRKSSILLDDLKKG
DYVVHEDYGVGIFEGIEKTEILGGVKDFIVIKYVGDDKILLPVENLEVIDRYISSGGSTP
VLDRLGKGSFGKLKDKVKKRLMEIAGQIVNTAAARALIKSPKINVNKKELQEFQSLSGFD
YTQDQTQAVNEIITQMSSGHIMDRLLSGDVGFGKTEVAMNTIFAAYKSGFQSALIVPTTL
LSAQHYRSLDERFKNLGIRYSKLDRFVSAKDKSSVIKALSSGELDVVVGTHSLFGLDFKN
LGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQAMSSIKTMSQLLTPPSE
RQPVRTFVKEYGEKLIKEVILRELRRGGQVFYVHNSIDHMPIKLGELKALLPSLRVVMLH
SKISAADTEKELLKFEAREYDLMIATSIIESGIHMPNVNTIIVDGADRFGIADLHQLRGR
VGRGQAEGFAYFIVQNKENLTDEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLVGDA
QSGHIKNIGYSLYLRMLEDAIKLLSNTMETERAKVDIKLTISAFISDEIVKEDRLRLDIY
RRLSACEDAVEIYEIQEEVIDRFGELDTQTKQFFELMVIKLLSLDKKIKSVSNYGQNITF
TYMNDAKESIKSDSKDDDDIVKAVLYYLRNNKPKVL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaatatattatttaagtactttaattcaaaacaaagcggagatttagagctt
ctaatttgtgaggactcaaaagaggcttatgaactggaaagcgtcgccaaatttttcaag
cgtgatgttttggtttttccagatttcagagcaggatttggagatgatttaagagttttt
aaagaggaactgcatcagcttttctcttctctcagagcatactacacatctaaaaagaaa
ccattagtaatatctcctttaaaaaccttacttttcaaccttccaaaagagaatttactc
aactcgacaatcatcgagtttggagagaaaatcagacttaaaaactttaaagagcagatg
ctattttggggttacaactttgtagatatggttcaagttgaaggagagatatcttttcgc
ggagatattatagatatctatgcaccttcttctaaaatgccgattcgaatttcacttttt
gatgatgagatagagcagataaaatattttgaattagagtctcaaagaacacaaaaagat
gagcttgatagttttcttataactcccgctttttactccttaaatgaggaagaatttaac
accctaaataaaaaaatagaattaagtgaatttgactcattggttaaagatattgcttct
ttgggtctatggcacttagatgagagtgcttcaaactttttagagaacaaaaatgtaaaa
ctcattagaaatctagacacacttttagtagatgcctacgctcttaataatccaacaatc
tcaagagagtgctttaatctagaacttttgccagaggctgatgattttaaagagttggta
gttgtagatattcacactcttttaaaagttcataaagataaaaaagtgactattatagcc
tctaacgaagctgttatgaaacaagcaggtctatttgaacttaaaaatattacagaagtt
tatgccccatatattctaaatattcttagtaaagatgaacttataatatctcttaacaaa
ccagataaaatgagacgaagaagaaaaagttcaattttacttgatgatttgaaaaaaggt
gattatgttgtccatgaagattatggtgtaggaatatttgaaggaattgagaagactgag
attcttggtggtgttaaagactttatagttattaagtatgttggtgatgataagatttta
ttgccagttgaaaatctagaggttatagaccgctatatatcatctggaggctcaacacca
gttttagacagacttggtaaggggagttttggaaagctcaaagataaggttaaaaaacgc
cttatggagattgccggacagattgtaaacacagccgcagcaagagcactgataaaatca
cctaaaataaatgttaataaaaaagagttgcaagagtttcaatctctttcaggctttgat
tacacacaagaccaaacacaagctgtaaatgaaataataactcagatgagttcaggccac
ataatggacaggcttcttagcggtgatgttggttttggcaaaacagaagtagcaatgaat
actatctttgcagcatataaatcaggtttccaatctgctctgatagtcccaactacactt
ttatcagctcaacactatcgctcacttgatgagagatttaaaaatctaggtatcagatac
tcaaagttagataggtttgtgtctgctaaagataaaagcagtgtcataaaggctctgtca
agtggagaattggatgttgtagttggtacacactctttgtttggattggactttaaaaat
ctaggtgttgtaattatagatgaagagcataagtttggggtaaagcaaaaagagaagata
aaagagctttatcataacgtacatcttctgtctatgagtgctactccaatcccacgctcg
cttaatcaggcgatgagttctataaaaacaatgtcacagctgttaactccaccaagtgag
agacaaccagttagaacttttgtaaaagagtatggtgaaaaacttataaaagaggttatt
ttaagagagcttcgccgtggcggtcaagtcttttatgtacataactctatagaccacatg
ccaataaagctaggtgaactaaaggctctgcttccgagtcttagagttgtaatgcttcac
tctaaaatatctgctgctgatacagaaaaagagcttttaaaattcgaagcaagagagtat
gaccttatgattgcaacttctattatagagtctggaatccatatgccaaatgtaaatact
attatagttgacggtgcagatagattcggtatagcagatcttcatcagcttcgtggtcga
gtaggacgcgggcaggctgagggctttgcttattttattgtacaaaataaagagaacttg
accgatgaggcaaaaaaaagacttttagcactagagtcaaactcatttcttggcagcggt
tcagttttagcataccacgatctagaaatacgcggtggcggaaatcttgttggtgatgcg
cagagcgggcatattaaaaacataggttattcactctaccttagaatgcttgaagatgct
ataaaactccttagcaacactatggagacagagagagcaaaagtagatattaaacttaca
ataagtgcttttatatctgatgaaatagtaaaagaggataggctccgtttagatatttac
agacgactctcagcctgtgaagatgctgtagagatatatgagatacaagaagaggttata
gatagatttggagagttggatacacaaacaaaacaattttttgagttaatggttattaaa
cttttgagtttagacaaaaagataaaatctgtttcaaactatgggcaaaatataactttt
acatatatgaatgatgcaaaagagagtattaaatcagactctaaagatgatgatgacatt
gtaaaagcagtgctttattatttaagaaataacaaaccaaaggtattatag
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