Sphingomicrobium maritimum: WJT74_01015
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Entry
WJT74_01015 CDS
T11086
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
smat Sphingomicrobium maritimum
Brite
KEGG Orthology (KO) [BR:
smat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smat03019
]
WJT74_01015 (hrpB)
Enzymes [BR:
smat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WJT74_01015 (hrpB)
Messenger RNA biogenesis [BR:
smat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WJT74_01015 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
HA2_N
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
XAM21838
LinkDB
All DBs
Position
complement(202069..204495)
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AA seq
808 aa
AA seq
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MLPIDAVLSDVRTALAEQGCALLIAPPGAGKTTRVAPALLDDDWCEGEILLLVPRRLAAR
AAGDYMARAAGEPAGRTIGYATRLDSRPGSRITVMTHGVFLARIQAQPDLPGVGAVLFDE
IHERSLDNDLALALALESRAALREDLRLLLMSATLDVEAFRPLLPDAPVIESEGRSHPLE
LRHIGRDPTRPIEPQVAVAIRAALASESGSILAFLPGVREIERTADALGALPADTILHRL
HGQVDPAAQRAALAPPPAGRRKVVLASAIAETSVTVDDVRTVVDSGLARRPRFDLGAGLT
RLVTERASRAAITQRAGRAGRQGPGTAIRLWEEAANTALAPHDPPEILDADLAPLLLSSL
TWGERDPAALPLATPPPAAALTAARGLLEDLGALESGQLTGHGRAIAALPLEPRLAHMLL
AAAVRGMAGSAALAAILLGERGLGGRGEDLEARARRALSDRSPRTKAALGLASGWLRRID
CPERLAATHIAAAIALACPDRLARRRGADGTRWESVGGRGFTLDPASPLSSADWLAVGEV
AGAAAGARILSAARIEEAEIETLFAERIEAFADVGYDPATGRALPKSGSRLGRIALSSGR
DSAVDPGKLAQALLDGVAKHGLDPLPFDRAADLLRTRAAYARRADGSIPDLSDAALIERR
EDWLGPLLGEVTRLDRLDPAHLRQALETLLGYPAMQSIDRLAPRRFSTPAGTGHDIDYDA
EAGPTVTVRVQALYGLTRHPTVGDTPLVLSLTSPAGRPIQTTRNLPGFWKGSWNDVAKEM
RGRYPKHHWPDDPAAATPSLKTKRAQKS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgatcgacgccgtcctttccgatgtccgcaccgcgctcgcggagcagggctgc
gcgctcctgatcgcgccgcccggggcgggcaagaccacccgcgtggcgcccgcgcttctc
gacgacgactggtgcgagggcgaaatcctgctgctggtcccccgacggctcgcggcgcgc
gcggcgggcgactatatggcgcgcgcggcgggagagccggcgggtcggacgatcggctat
gccacgcggctcgacagccgccccggcagccgcatcacggtgatgactcacggcgtcttc
ctcgcgcggatccaggcgcagcccgatcttccgggggtcggcgccgtcctgttcgacgaa
atccacgaacgcagcctcgataacgacctcgcgcttgccctcgcgctggaaagccgtgcg
gcgctgcgcgaggatctgcggcttttgctgatgtccgcaacgctcgacgtggaggccttc
cgaccgttgttgcccgatgcgcccgtgatcgagagcgaggggcgcagtcacccgctggaa
cttcgccatatcggccgcgatccgacccgcccgatcgagccgcaggtcgcggtcgccatc
cgcgcggcgctcgcgtccgaaagcggatcgatcctcgcctttcttcccggcgtacgcgag
atcgaacgcaccgccgatgccctcggcgcgctgccggccgacaccattctccaccggctt
cacggccaggtcgatcccgccgcgcaaagggccgcgctcgcgccgccgcccgccggtcga
cgcaaggtcgtcctcgcaagtgcgatcgcggagaccagcgtgacggtcgacgatgtgcga
acggtggtggacagcgggctggcgcgccggccgcgcttcgatctgggcgctggtctcacc
cgcctcgtcaccgaacgcgccagccgcgcggcgatcacccagcgggcgggacgcgcggga
cgccagggtccgggcaccgcgatccggctgtgggaagaggcggcgaatacggcattggcg
ccgcacgatccgcccgaaatcctcgacgccgaccttgcgccgctgctgctctccagcctc
acgtggggcgagcgcgatcccgcggcgctcccgctggcgacgcccccgcccgcggcggcc
ctcacggcggcaagaggcctgctcgaagacctgggggcgctcgagagtggacagttgacc
ggtcacggtcgtgcgatcgcggcgctgccgctcgaacctcggctggcgcacatgctgctc
gccgctgccgtgcgcggcatggcgggaagcgccgcgctggccgcgatactgctgggcgag
cgggggctcggcgggcggggagaagacctcgaggcgcgggcgaggcgcgcgctgtccgat
cgctcgccgcgaacgaaggctgcgctcgggctggcgagcggatggcttcggcggatcgat
tgccccgaacggctcgccgccacccatatcgccgccgccatcgccctcgcctgcccggac
cggctcgcgcggcggcgtggcgcggacggcacccgctgggaatcggtcggggggcgggga
ttcaccctcgatcccgccagcccgctgtcgagcgccgactggctggcggttggcgaagtg
gcgggcgccgcggcgggcgcgcggatcctgtcggccgcgcggatcgaggaagcggagatc
gagacgttgttcgccgagcgcatcgaggcgtttgcggatgtcggctacgaccccgccacc
gggagggcgcttcccaagtcgggaagtcggctcgggaggatcgccctgtcgtcgggtcgc
gacagcgcggtcgatccgggcaaattggcacaggcactgctcgacggcgtcgcgaaacac
ggcctcgacccgctaccgttcgacagggctgccgacctactgcgaacccgtgcggcctat
gcgcgccgcgccgacgggtcgatccccgatctgtccgacgccgcgctgatcgaacggcgc
gaggactggctcggccccctgctcggagaggtcacccgcctcgaccggctcgatcccgct
catctccggcaggcgctcgagacgttgctcggctatcccgcgatgcagtcgatcgatcgg
ctcgctccacgccgtttttccacccctgccgggaccggtcacgacatcgattacgatgcc
gaggcggggccgaccgtgacggtccgggttcaggcgctctacggcctgacacggcacccg
acggtcggcgacacgccgctggtcctcagcctgaccagtcccgcaggccgcccgatccag
acgacgcgcaatctgcccggcttctggaagggcagctggaacgacgtcgccaaggaaatg
cgcggccgctatcccaagcatcattggcccgacgatcccgccgccgcgacgccgagcctc
aagaccaagcgcgcccaaaaatcttga
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