Sphingomicrobium maritimum: WJT74_10745
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Entry
WJT74_10745 CDS
T11086
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smat Sphingomicrobium maritimum
Pathway
smat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJT74_10745 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smat03021
]
WJT74_10745 (rho)
03019 Messenger RNA biogenesis [BR:
smat03019
]
WJT74_10745 (rho)
Transcription machinery [BR:
smat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WJT74_10745 (rho)
Messenger RNA biogenesis [BR:
smat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WJT74_10745 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA_22
S1CSD-TOTE-2
NACHT
AAA_25
OB_RNB
Fungal_virus_P2_C
AAA
Spore_III_AA
AAA_14
Motif
Other DBs
NCBI-ProteinID:
XAM22835
LinkDB
All DBs
Position
2121662..2122918
Genome browser
AA seq
418 aa
AA seq
DB search
MHLQELKEKPPAELVAMAEELGVEGASTLRKQDLMFSILKEHAEEGEKVMGMGTIEVLND
GFGFLRSPEANFLAGPDDIYVAPNIVRSMGLRTGDTVEGEIRSPKDGERYFALTKVTQVN
FDDPQAVRQRVNFDNLTPLYPDEKLTLDSADPTDKDKSARVIDIVAPLGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLLVLLIDERPEEVTDMQRSVKGEVVSSTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSKMDEVIFEEFKGTGNSEIVLDRKVSDKRIFPSLDV
GKSGTRKEELLVDQATLSKMWVLRRILMQMGTIDAMQFLLDKMKDAKSNEDFFASMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttcaggaactcaaggaaaaaccgcccgccgaactggtcgcgatggccgaagag
ctgggcgtcgagggcgcgagcacgctgcgcaagcaggacctgatgttctcgatcctgaag
gaacatgccgaagagggcgagaaggtcatgggcatgggcaccatcgaggtgctcaacgac
ggtttcggctttctccgcagccccgaagcgaatttcctcgccggtcccgatgacatctac
gtcgcgcccaacatcgtgcgttcgatggggcttcgtaccggcgacacggtcgagggcgag
atccgcagtcccaaggacggcgaacgatatttcgcgctcaccaaggtcacgcaggtcaat
ttcgacgatccgcaggcggttcgccagcgcgtgaatttcgacaatctgacgccgctctat
cccgacgagaaactcacgctcgacagcgccgatccgaccgacaaggacaagagcgcgcgg
gtgatcgacatcgtcgcgcccttgggcaagggccagcgcgcgctcatcgtcgcgccgccg
cgcacgggtaagaccgtactgctccagaatatcgccaaggcgatcaccgacaatcatccc
gaggtgttcctgctcgtcctgctcatcgacgagcggcccgaggaagtcaccgacatgcag
cgcagcgtgaagggtgaggtcgtgtcctcgaccttcgacgaaccggcgtcgcgccacgtg
caggtcgccgaaatggtgatcgagaaggccaaacgcctcgtcgagcacaagaaggacgtc
gtcatccttctcgacagcatcacgcgcctcggccgcgcctacaacacgaccgtgcccagc
tcgggcaaggttctgaccggtggtgtggatgccaacgcgctccagcggccgaagcgcttc
ttcggcgccgcacgcaacatcgaggaaggcggatcgctctcgatcatcgcgaccgcgctg
atcgataccggctccaagatggacgaggtgatcttcgaggagttcaagggcaccgggaac
agtgaaatcgtcctcgaccgcaaggtgtcggacaagcgcatcttcccgtcgctggacgtc
ggtaaatccgggacgcgcaaggaagaactgctcgtcgaccaggccacgctttccaagatg
tgggtgctgcgccgcattctcatgcaaatggggaccatcgacgcgatgcagttccttctc
gacaagatgaaggacgccaagtccaacgaagatttcttcgcgagcatgaaccagtag
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