Scophthalmus maximus (turbot): 118282496
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Entry
118282496 CDS
T09850
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04145
Phagosome
smau04148
Efferocytosis
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04810
Regulation of actin cytoskeleton
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118282496 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118282496 (itgb5)
04148 Efferocytosis
118282496 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
118282496 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118282496 (itgb5)
04810 Regulation of actin cytoskeleton
118282496 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118282496 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smau04515
]
118282496 (itgb5)
Membrane trafficking [BR:
smau04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
118282496 (itgb5)
Cell adhesion molecules [BR:
smau04515
]
Integrins
Integrin beta subunits
118282496 (itgb5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
EGF_integrin
Integrin_b_cyt
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
118282496
NCBI-ProteinID:
XP_035459490
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Position
14:1591055..1618256
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AA seq
803 aa
AA seq
DB search
MCGAGTWMWRAALCCVLLGNLLPPARGLNMCMSGSATSCEECLLIHPSCAWCAQEDFGRG
RTLTSRCDFSQNLQKRGCEAPFIEYLASSTSVLENRPLSSKGSGSTQYDVVQIMPQKISL
SLRPGDQTWFGVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLALEMGKLTSNFR
LGFGSFVDKNMSPFSYTAPKYQENPCSGYKLFPKCVPTFGFRHILSLTDKVDRFNEEVQK
QMVSRNRDAPEGGFDAILQAAVCKEKIGWRKEAYHLLVFATDDVPHLALDGRLGGLVQPH
DGQCHLNDLNEYSASTKMDYPSLALLGEKLAENNIFLIFAVTKRLYVIYKNFTALIPGTT
VEILDQDSKNVIQLIIAAYNNIRSKVELTVWDHPEDISLSFTATCQDGKPLPGLRKCADL
KIGDTVSFNVSVEARSCPARGADQSFTIKPVGFKDRLQLAVDYQCDCGCSRTAQTNSSIC
SSIGTYNCGTCRCEPGYLGARCECQEGEASSTYLSGCREAEGKQVCSGRGECSCNQCLCY
ESEFGKIYGGFCECDDFSCARHKGVLCSGHGECHCGECKCHAGYVGDNCNCSTETASCVA
DDGQMCSGRGHCACGRCQCTEPGAFGVTCEKCPTCPDACGTKRECIECRLFNSGRLADNQ
TCQRLCKDEIITVESFNADDPGAVLCLYKTDDDCVMKFTYSEHASGQSILTALQEPECGG
GPDAMTVLLAVVGSILLVGMVLLAVWKLVITVHDRREFARFQSARSRARYEMASNPLYKQ
PVSTHFVETDFNMYGKSYNGGVH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggcgcggggacgtggatgtggcgagcggcgctgtgctgcgtgctgctggggaac
ctgctgcccccggcccgaggtctgaacatgtgtatgagtggcagcgcgacgtcctgtgaa
gaatgtctcctgattcaccccagttgcgcctggtgcgcacaagaggactttgggaggggg
cggactctgacgtcgcgctgcgacttcagtcagaacctgcagaagaggggctgcgaggct
ccgttcatcgagtacctggccagcagcacctcggttctggagaaccggcccctgagctct
aaaggctccgggtcgacccagtacgacgtggtccagattatgcctcagaagatctccctc
agtttgagaccaggagaccagacgtggttcggcgtgcaggtgcggcaggtggaggactac
ccggtggacctctactacctgatggacctctcgctctccatgaaggacgacctggacacc
atccgcaacctgggcaccaagctggcactggagatggggaagctcaccagcaacttccgg
ctgggcttcggctccttcgtggacaagaacatgtcgcccttctcctacacggcgcccaag
taccaggagaacccctgcagcggatacaaactcttccccaaatgcgtccccaccttcggg
ttccgccacatcctgtcgctgacggacaaagtggaccgcttcaacgaggaggtgcagaag
cagatggtgtcgcgcaaccgggacgcgccggagggcggattcgacgccatcctgcaggcg
gctgtttgtaaggagaagatcggctggaggaaggaggcctaccacctgctggtgttcgcc
acggacgacgtgcctcacctggctctggacgggcggctgggaggtctcgtgcagccgcat
gacggacaatgtcacctcaacgacctgaacgagtacagcgcctccaccaagatggattat
ccttctctggctcttctgggagagaaactggctgaaaacaacatctttctcatcttcgct
gtcacaaagcggctgtacgttatttataagaatttcactgcactcatccctggaacgacg
gtggagatcctggatcaggactcaaagaacgtcatccagctgatcatcgcagcgtacaac
aacatccgctccaaagtggagctgacggtgtgggaccacccggaggacatcagcctgtcg
ttcaccgccacctgccaggacgggaagccgctgccgggcctcaggaagtgtgccgacctg
aagataggagacacggtttccttcaacgtgagcgtggaggcgaggagctgccctgcccgc
ggcgccgaccagagcttcaccatcaagccggtgggcttcaaagaccgcctgcagttggcg
gtggactatcagtgcgactgcggctgcagtcggacggcgcagaccaacagcagcatctgc
agctccatcggtacgtataactgcgggacgtgtcgctgcgagccgggctacctgggcgcc
cgctgcgaatgccaggagggcgaggccagcagcacgtaccttagcggctgccgcgaggcc
gagggcaagcaggtgtgcagcggccgcggggagtgcagctgcaaccagtgtctgtgctac
gagtcggagttcggcaagatctacggcggcttctgcgagtgcgacgacttctcctgcgcc
cgacacaaaggcgtcctctgctctggtcacggcgagtgtcactgcggcgagtgcaagtgt
cacgccggctacgtcggcgacaactgcaactgctcgacggagacggcgtcctgcgtcgcc
gacgacgggcagatgtgcagcggccggggccactgcgcctgcggccgctgccagtgcacc
gagccgggcgccttcggggtcacgtgcgagaagtgtcccacctgccccgacgcctgcggc
accaagagggagtgtatcgagtgtcggctcttcaactcgggacgactcgcagacaaccag
acctgccagcgcctctgcaaggatgaaatcattactgtggagtccttcaacgccgacgac
cccggcgccgtgctgtgtctgtataaaaccgacgacgactgcgtcatgaagttcacgtac
tccgaacacgccagcggacaatccatcctcaccgcgctccaagagccagagtgcggcggc
ggaccggacgccatgacggtgctgctggccgtggtcggcagcatcctgctggtgggaatg
gtgctgctcgccgtgtggaagttggtcatcaccgttcacgaccggcgggagtttgcgcgc
ttccagagcgcacgctcacgcgcccgctacgagatggcctccaaccctctgtacaagcag
ccggtgtccacgcacttcgtggagacggatttcaacatgtacgggaagtcgtacaacgga
ggggtccactga
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