Scophthalmus maximus (turbot): 118282686
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Entry
118282686 CDS
T09850
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X3
KO
K06823
collagen type XVIII alpha
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smau04147
]
118282686 (col18a1a)
00535 Proteoglycans [BR:
smau00535
]
118282686 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118282686 (col18a1a)
Exosome [BR:
smau04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118282686 (col18a1a)
Proteoglycans [BR:
smau00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118282686 (col18a1a)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118282686 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
118282686
NCBI-ProteinID:
XP_035459876
LinkDB
All DBs
Position
14:18411664..18484851
Genome browser
AA seq
1374 aa
AA seq
DB search
MKMRCWSRPERVVCCLLLLVSPAASQWPEDSGVSLLQLIGDPPPSEITQVFGPDNSPGYV
FGPDANTGQLARAHLPSPFYRDFSLIFNLKPTSDRGGVIFSVTDASQQIIYVGVKLSPVQ
GGNQNVILYYTEPDSQQSYEAATFLVPSMRDTWTRFAIAVRDDKVMFYLNCDTDPRVVRI
ERSPDEMELEAGAGIFVGQTGGADPAKFLGVIGELRVVGDPRAAGRHCEEDEDDSDMASG
DGSGYEEPRPTRPAVEKHRLTTTPPSSRPIQQPPLTSKEQASAGRETASDNQHVSVSVES
RLGLPGSAGAAGAKGDKGDQGDRGEKGERGPIGSKGESGSGSGSRGGARGEKGEPGEKGL
KGSAGFGYQGTKGDAGLPGAPGPPGPPGPATEFSVGNDGAVVSSAPGPRGPAGPQGVPGP
QGPPGADGDPGDPGEDGKIGPDGPPGFPGTPGDSGSKGEKGDRGEGQPGPRGVPGPPGPP
GPGMRSTFVDMEGSGFPDLESIRGLPGLPGPPGPPGPPGLTTGGTSLSSGAFGPPGKDGA
PGQPGLPGLPGTDGLPGALGPKGEKGDSGELGLPGVAGEKGARGDLGLPGPAGESGLAGL
PGPIGPVGRPGPPGPPGPSYRVGFDDMEGSGGGFTNGLPGVRGPEGRQGPPGFPGLPGKP
GLPGIPGQKGGEGPAGREGRPGLDGFQGPQGPKGDSGDKGERGDHGRDGTGLPGPPGPPG
PPGQIIYSTPGNFDGVGGSVGPQGGPGLPGQAGFPGPVGPKGDRGDPGSPGFGVKGDKGE
PGSVIGPDGNLLYLDGLSGLKGDRGPSGPVGPPGQYGPPGIKGEIGMPGRPGRPGVNGYK
GEKGDASTGAGYGYPGVPGPAGPPGPPGPPGPTIPLDRFNRYDDASRNYPVVKGEKGERG
DRGTPGIPGTASNFDIYTFKNEMKGQSGDSGVKGEKGEPGGGYYDPRFGGVQGPQGPPGK
PGLPGPKGDSIIGPSGPQGPPGQPGIGYDGRQGPPGPPGPPGPASSHPGAYRPNHSASVP
GPPGPPGPPGTPGHSSGITVLRSYETMMASARRQAEGSLIYIIDKSDLYLRVRDGLRQVM
LGDYRPFFRDLENEVAEVQPPPVILYPQSQDQSHNNNGAGHYSQGGSAIRPIEPPPHPPV
DPVYPPQYDPRFPDPRQTGQTDGRPATQKTEHRYPVTPQRRPSLPLPQPFGHVDVSGSGL
HLIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDSLP
ILNLKDQVLFSSWESIFGDNTSKMRENVPIYSFDGRDIIRDSAWPEKMVWHGSSNKGHRQ
MDHYCETWRAGDHPVTGLASSLQSGQLLQQTSSSCSGSYIVLCIENAIISHSKK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaggtgttggtcgcggccggagcgcgtcgtctgctgcctcctgcttctggtc
agcccggcggcgtcgcagtggccagaagacagtggtgtctcccttctgcagctgatcggg
gaccctccccccagtgagatcacacaggtcttcgggcctgacaacagccccggatatgtt
ttcggccccgatgccaacacgggccagctggcacgcgcccacctgcccagcccgttctac
cgagacttctcccttatcttcaacctgaagcccacctctgacaggggcggagtcatcttc
tctgtcacggacgcctcccagcagatcatctatgtgggcgtcaagctatcgcccgtgcag
ggcggcaaccagaatgtcatcctgtactacacggaacccgactcgcaacagtcgtatgag
gcggccacgttccttgtgccctccatgagggatacctggacccgcttcgccatcgctgtg
agggacgacaaggtgatgttctacctgaactgtgacacagaccctcgggtggtgcgcatc
gagaggtccccggatgagatggagctggaggcgggtgccggaatctttgttggccaaact
ggaggagcggatcctgccaagtttctgggggtgatcggtgagctgagggtggtgggagac
ccccgtgccgctgggagacactgtgaagaggatgaggacgactcagatatggcttcaggc
gatggaagtggctatgaggaaccgagacccacaagaccagccgtggagaaacacagattg
acgactactcctccatcctctcggcccattcagcagccaccactgaccagcaaagagcag
gcgtccgctgggagggagacggcaagtgacaaccagcacgtttcagtttctgtggagtcc
aggctcggacttcctgggtcagcaggagcggctggggctaaaggagacaagggcgaccaa
ggggacagaggagagaaaggagagaggggtccaattgggtcgaagggagaatcaggctct
ggttccggctcacggggtggagcccgcggagagaagggtgaaccaggagaaaagggattg
aagggcagtgcaggctttggctaccaaggaacgaagggtgatgccggcctccctggggcc
cccggcccccccggccctccagggcctgcaaccgaattttcagtaggcaatgacggcgca
gttgtttcgagtgcccctggaccccgaggaccagctggaccacaaggtgtcccgggcccc
cagggaccaccaggagctgatggcgatcctggtgatcctggtgaggatggaaaaattggt
cctgatggacctccaggcttcccaggaacaccaggcgactctggatccaaaggagagaag
ggagaccgtggagagggtcaacctggccccaggggggtcccaggccctcccgggcccccc
ggaccaggaatgagatctacttttgtggatatggaaggctcaggtttcccggacttggaa
tccatccggggactacctgggctaccaggtccccctggtccccctgggcctcctggtctc
accacaggcggcacatcactgagttctggggcatttggaccgccaggaaaggatggggca
cccggtcaacctggcttgcctggtttaccaggtaccgatggcctcccaggagctctcggt
cccaaaggagagaagggtgattcaggcgagctgggtcttccaggagtagctggagagaag
ggagctcgaggagaccttggtttaccgggacctgcaggagagtccggactggcgggtctg
cctggacccatcggaccagttgggcgacctgggcctcccgggcctcctggaccaagttat
cgcgttggatttgatgacatggagggctcaggaggaggtttcaccaatggactacctggc
gtcagaggaccagaaggaagacagggtcctcccggctttcctggacttccgggtaaacct
gggttgccaggcataccgggtcagaagggcggcgaaggtcctgcaggacgagaagggcga
cccgggctggacggcttccaaggacctcagggaccaaagggcgacagcggtgacaaagga
gagaggggagaccatggtcgagatggaaccggactcccaggtccaccaggcccacctgga
ccaccgggacagatcatctactccacacctggcaatttcgacggagtcggcggcagcgtt
gggcctcagggcggacctggtctacctggtcaagctggattccctggtcctgttggacca
aagggtgacagaggggaccctggctctcctggcttcggagtgaagggtgacaaaggtgag
cccggctcagtgatcggacctgatggaaatctgctgtatctggacggcttgagtggtctg
aagggagacagaggaccttctggtcctgttggccctcctggccagtatgggcctcctgga
ataaagggtgaaatcggaatgcctggcagacctggtcgccctggtgtaaatggatacaag
ggtgagaaaggagatgcgtcaactggtgctggctatggctacccaggagtccctggccct
gcaggaccacccggaccacccggaccccccgggcccaccattcctctagaccgcttcaac
cgatatgatgacgcttcaaggaattacccagtagttaaaggggaaaaaggagaacgtggc
gatcgaggaactccagggatcccaggaacagcttccaattttgatatttacacattcaag
aatgaaatgaagggacagagcggagactcaggtgtgaagggagaaaagggagagcctggc
ggtggatactatgacccacgatttggaggagtgcagggtccacaggggcctcctggcaaa
ccaggcctaccgggtccaaagggagattccataataggcccatctgggccccagggacca
ccagggcagccgggcattggttacgatggacgtcagggtcctccaggaccacccggacct
ccaggacctgcaagctcgcatcccggagcatacaggcccaatcactccgccagtgtcccc
ggacctcccggtccccctggcccgcctggaactcctggtcactcctctggtattacagtt
ttgaggtcgtacgaaaccatgatggcctccgccagacgccaggcagaaggcagcctcatc
tacatcatagacaaatcagacctgtatttaagagtacgcgatggactgcggcaagtcatg
ctcggagactaccggcccttcttcagagatctggagaacgaggtggccgaggtccagcct
ccgcctgtcatcctgtacccccagtcccaggaccagtcccacaacaacaacggcgctggc
cattattcgcagggcggctccgccatacgtcccattgagcccccgccgcacccgcctgta
gaccccgtatacccgccacagtacgatcccaggttcccagaccccagacagacgggtcag
acggacgggaggccggccacccaaaagactgagcacagatacccggtcactccgcagaga
cgacccagcctgcctcttccacagcccttcggacacgtggacgtatcgggatcagggctg
catctcatcgccctgaacgcccctcagaccgggaacatgcgaggaatccgcggagcagac
ttcctgtgcttccagcaggcccgggccgtgggcctgaagggaaccttcagagcattcctg
tcctccaagcttcaggacctctacaccattgtccgccggtcggaccgggacagcctcccc
atcctgaacctcaaggaccaagtgttgttcagcagctgggagtccatcttcggtgacaat
acgagcaaaatgagggagaacgtaccaatctactcgttcgatggaagagatatcatcagg
gacagcgcatggcccgagaaaatggtctggcatggatcaagcaacaaaggccacaggcaa
atggaccactactgtgaaacatggcgggccggcgaccaccccgtgacgggcctggcctcg
tcgctgcagagcggccagctcctgcagcagacctccagcagctgctccggctcctacatc
gttctctgcatcgagaacgccatcatatcacactccaaaaaataa
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