Scophthalmus maximus (turbot): 118282700
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Entry
118282700 CDS
T09850
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118282700 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118282700 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118282700 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smau04147
]
118282700 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118282700 (col4a2)
Exosome [BR:
smau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118282700 (col4a2)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118282700 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118282700
NCBI-ProteinID:
XP_035459904
LinkDB
All DBs
Position
14:complement(8020090..8068473)
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AA seq
1677 aa
AA seq
DB search
MRATMAGHHSRGPRDLRLLLLCLSVAILASGVRAGGKKHSGPCGGRDCSGGCKCFPEKGT
RGQPGPLGTQGPQGPHGRPGDPGIQGPKGHRGDSGHGGIIGPKGNVGQTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTKGDSGLMGQPGYNGAPGFPGQSGRKGEKGDTLDMSVYIE
RFRGDQGTPGIHGIFGPTGNPGWQGNRGFPGPKGPPGPPGPRGQKGTMTKVIKGTKGGHG
DTGPPGLPGNSTHQHTLPPYGPQGKPGEKGLKGERGDQADNKGETGVMGFPGSRGEPGAD
GNPGPRGDLGEAGQNGRDGPKGVRGDPGELISSGSFWPWSPAGGPPGPPGEQGPQGERGP
VGDQGFPGLPGRSASDTQQQVFDFSGPFGVKGEQGEKGQQGEAGRPAVSVGPPGVDGRPG
PRGPPGPAGKWSEFFKGAPGGRGRPGNAGFKGLKGDHGQCDCAIVNSPPGLPGPAGERGD
AGMTGEFGQEGEPGDEGPRGDDGFPGSPGPSGEPGPKGRKGDASVATQKGYPGDPGTPGQ
NGESGAPGATGRDGLPGFPGSQGPSGEGPTGERGDKGFPGLPGRPGAAGLRGEPGAVLGA
LKGQRGLPGDDGLPGYHGVPGTPGSPGGCSTTGDGGQADVTGPCNTIPGPPGQPGLPGPN
GLPGFAGLTGQKGPQGPLGVQGEKGETGERGIGGLPGPTGFSGPRGDPGVPGSKGFVGAP
GFPGAPGRHGTQGEKGLHGEIFGASTGSRGDPGLPGFQGTKGQTGDPGEPGYPGMVGMPG
MIGFKGESGPNGLQGEEGSPGPAGKYGYPGDPGRAGPPGSRGADGQPGFTGERGTEGDSG
PPGPIGLKGVPGGYGDDGALGEYGSPGNPGQPGVQGRPGVPGMKGYKGSPGMSGFEGNRG
DLGLKGFEGQRGEPGVPGYIGAKGIIGQSGEKGDRGLRGPAGEKPQIPAYMIVDMKGTKG
DHGNPGNQGFTGPRGTKGLPGVPGSEGTHGLPGDPSNKKGFHGDPGAQGLSGIKGMPGPT
GNRGITGFQGMPGKQGIKGSPGAYGASGDKGRKGFKGEKGPRIDLPGPTGLRGEDGFHGV
LGQKGLFGSTGDRGTIGFDGIEGKKGEPGEPGILGFPGSDGQRGTPGNQGQKGFPGIPGN
DGHPGVPGFPGNKGFPGLKGLYGLHGLKGQKGIQGTPGLDTIGLSGEPGVKGEKGESGDP
NNQPGFPGTVGLKGFQGPPGDQGQPGPPGFRGPLGPDGTPDRPGRSGDPGFIGAKGLQGF
PGPRGFPGVDAPPGEKGVSGSNGFPGVAGRKGFHGDPGSLGFRGPNGVSGKKGVKGEQGL
MGVPGMTGVKGERGPVGPKGDTGPPGLHGHQGSQGPSPLPIRIPGERGIPGPQGIQGPMG
VRGEVGPQGPPGDTGFMGPIGQKGMPGISGTPGTAGFRGLVGQMGHPGLQGMEGHRGNPG
ISGLPGMPGRSVSVGYLLVKHSQSDLTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLA
GSCLPRFSSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCE
APSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTP
FIECNGAKGTCHYFANKHSFWLTSIDQSFHAEPRSETLKAGQLLARISRCQVCMKNL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgagagcgaccatggccgggcatcacagcagggggccgagggatctgaggctgctgctt
ctgtgcctctccgtcgccatcctcgcgtcgggagtgcgcgcgggtgggaagaagcacagt
ggcccttgtggaggaagagactgcagcggtggctgtaaatgtttcccagagaaaggaacc
aggggtcaacctgggcctcttggtactcagggtccacaggggcctcacgggagaccaggt
gatccaggcatccaaggaccaaaggggcacagaggggacagcggtcatggtggcatcata
ggtcctaaaggaaatgtgggacaaaccggcgttcctgggttttctggaaatgatggcata
cctggtcacccaggacaagctgggcccagggggaagccaggtgcagacggctgtaacggg
acaaagggagattcaggtttaatgggacaacctggttataatggcgcacctggttttcct
ggacaatcaggcaggaagggagagaagggagacactctggacatgagtgtgtacatcgag
cgtttccggggagatcaaggaacaccggggatccatggaatatttgggcctacaggaaac
ccaggatggcaaggtaaccgaggcttcccaggaccaaagggtcctccggggcctccaggt
ccgcgtggacaaaagggcactatgaccaaagtgattaaaggcaccaaaggagggcacggg
gacaccggaccaccagggcttccaggaaactctactcatcaacatactctgcccccctac
ggaccccagggaaaacctggagaaaaggggctgaaaggagaaagaggagatcaggcagac
aacaaaggagaaactggcgtaatggggttccctggatcgcggggcgaacctggtgcagat
gggaatcctggaccaaggggggatcttggtgaagcgggacaaaatggcagagatggacct
aagggagtcagaggagacccaggagagctgatttcctccggatccttttggccttggtct
ccagcaggtggtcctcctggtcctcctggtgagcagggtccacagggtgagaggggccca
gtaggagatcaaggcttccctggactcccaggacgttctgcttcggacactcaacaacaa
gtgtttgacttctccgggccattcggtgtaaagggggagcaaggagagaagggccaacaa
ggggaagcagggagacctgctgtcagcgtaggacccccaggtgttgacgggcgcccaggg
cccaggggccctccgggacctgcaggaaaatggtctgagtttttcaaaggggctccaggc
gggagagggaggcctggcaacgcaggctttaaaggactgaaaggtgatcatggacaatgt
gactgcgccattgtaaactctccaccgggactccctggtcctgctggggagcgcggcgat
gctgggatgactggagagtttggtcaggagggcgagccaggagacgaaggtccccgaggc
gatgacgggttccctggctctcctgggcccagtggggaaccgggtccaaaaggccgtaaa
ggggacgcaagtgtggccacacagaaaggatatcctggagatccagggacacctggacaa
aacggtgagtctggagcaccaggtgctactggcagagacggtttacctggtttccctggg
agccaaggtccttcgggagagggtcccacgggagagcgtggggacaaaggttttccaggt
ctacctggtcgacccggtgcagccgggcttaggggagaaccaggtgcggtccttggagcc
ctcaaaggccagcgtggtttacctggagacgacggtctcccaggttatcatggagttcca
ggaacacctggcagtccaggcggctgtagtacgacaggagatggaggacaggcggatgta
acaggtccttgcaatacaattccaggacctcctgggcagcctggactcccaggacccaat
ggattaccaggtttcgcaggtcttacgggccaaaaaggaccacagggtccacttggagta
caaggagagaaaggagaaacaggagagcggggtataggtggccttcctggaccaacagga
ttttccggcccccggggagacccgggagttcctggtagcaaaggctttgttggagcgcct
ggtttccctggtgcacccggccggcacgggacacaaggtgagaagggtttgcacggagag
atctttggagcatcaactggatctcgtggtgacccagggctgcccggattccaagggact
aaaggccagacgggagatccaggagagccaggctatccaggaatggtcggcatgcctggt
atgattggcttcaaaggagaaagtggccctaacggactgcagggggaggaagggagtcct
gggccagccggcaagtacggctaccctggtgaccctgggcgagcaggtccacctgggtct
cgtggtgctgatggacaaccaggtttcactggagagaggggaactgagggagactcagga
cctccaggtccaatcggattaaaaggggtccctgggggttacggtgatgacggtgccctt
ggagaatatggctcaccaggtaacccaggacagccaggtgtccagggacgcccaggagtc
ccgggaatgaaaggatacaaagggtctcccggcatgtcaggttttgaggggaacaggggt
gatttagggctgaagggcttcgaggggcagagaggagaacctggagtgccaggctacatt
ggcgcaaagggcataataggtcaaagtggagagaagggtgatcggggtctgcgagggcca
gcaggggagaagcctcaaattcctgcctacatgattgttgacatgaagggcaccaaggga
gaccacggaaatccaggaaatcaaggtttcaccgggccgagaggtactaaaggtttgccc
ggggtgcctggcagtgagggaactcatggtttgcccggagaccctagcaataagaaagga
ttccacggagatccaggtgcacaggggctctcagggataaaaggaatgcccggcccaact
gggaaccggggaattactggttttcagggaatgcctggcaagcagggaattaaaggaagt
cccggtgcctatggtgcatcaggagacaaaggaaggaagggcttcaaaggtgaaaaaggc
cctcgtatagaccttccaggacctaccggattgagaggagaggatggttttcatggagtg
cttggccaaaaaggattatttggaagcactggtgacaggggtacaattggttttgatggt
attgaagggaaaaagggagagccgggtgaaccaggaatattaggattcccaggctcagat
gggcagaggggaactcctggtaaccagggccaaaaaggctttcctggaattcctggtaat
gatggacacccaggcgttcctggcttcccagggaacaaaggtttccctggcctgaagggt
ctctatggattacatggactgaaaggacagaagggtatccaagggacaccaggcctggat
acaattggactatctggggagccaggggtcaaaggagagaagggagaaagcggtgacccc
aacaaccagccaggttttccaggcaccgtgggtttgaaaggcttccaaggacctccaggt
gaccagggtcaacctgggccaccaggattccgaggccccctaggaccagatgggacccca
gacagaccaggacgcagtggggaccctggcttcataggagctaaaggattacaaggtttc
ccaggacccaggggattccctggtgtggatgctccccctggggaaaagggtgtgtcagga
tcgaatgggtttcctggagtcgctggtaggaaaggattccacggagatccaggttcattg
ggattcagggggcctaatggtgtttctgggaagaaaggggtgaaaggagagcaagggttg
atgggagttcctggtatgactggcgtgaagggagaaagaggaccagttggtccaaaagga
gacactggaccaccaggtctccatgggcaccaaggcagccaaggtccttctccacttccc
atcagaattccaggagagaggggcattccgggaccacagggtatccaaggaccgatgggg
gtgagaggggaagtagggccacagggtcctcctggggatacaggtttcatgggacccatt
gggcagaagggcatgccggggatcagtggcacgccaggaacagctggattccgtggattg
gttggacaaatgggccaccccggtctgcaaggcatggaaggtcaccgtggcaaccctggc
atctccgggttacctggtatgcctggccgcagtgtcagtgtgggctacctgcttgtgaaa
cacagtcagtccgacctgacgcccatgtgtcctgtgggcatgtctaaactgtgggacggc
tacagtctgctctatttcgagggacaggagaaagcacacaaccaggatctcggtttggct
ggctcctgcctcccacggttcagcagcatgcccttcctgtactgcaatcctggagacatt
tgttactacgccagcagaaatgataaatcctactggctgtcaacaactgctcctcttccc
atgatgcccgtagaagagggagagatcaaaccgtacatcagccgctgctcagtgtgcgaa
gctccatcagttgccatcgcagtccacagccaggacatcaccatcccacagtgccctgcg
ggctggcgcagcctgtggatcggctactccttcctcatgcatacagcggcaggaaacgaa
ggcggaggtcagtccctgtcatcgcccggctcctgcctggaggacttccgcacgacaccg
ttcatcgagtgcaacggggccaaggggacatgccactacttcgctaacaagcacagcttc
tggctgacgtccatcgatcagtcgttccacgccgagccgcggtcagagacgctcaaagca
ggccagctgctggcgcgcatcagccgctgccaggtctgcatgaagaacttgtga
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integrated database retrieval system
