Scophthalmus maximus (turbot): 118282889
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Entry
118282889 CDS
T09850
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118282889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118282889
03041 Spliceosome [BR:
smau03041
]
118282889
03036 Chromosome and associated proteins [BR:
smau03036
]
118282889
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118282889
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118282889
mRNA cycle factors
Common to processing body (P body) and stress granule
118282889
Spliceosome [BR:
smau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118282889
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118282889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
118282889
NCBI-ProteinID:
XP_035460315
LinkDB
All DBs
Position
14:845541..860733
Genome browser
AA seq
786 aa
AA seq
DB search
MSHVVIDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAPKAHISPAIFQVPSK
QWPQPWQAESQHRNNCTSGWEDCTIGYPRLASQELALYHAYSGGWPTQCDSPGWDGGRNN
GFVNGYHDNRSNGGYGGRGPPRNDRGGRGAYRGNRGGGSFTQPLQSAAFGNFDQKDGNYG
GAPRDASYNSFGGRTDRSKSTFFNDRGTSSRGRYERGGYSGGGSNRWGEDSREEDWSKPT
APNERLENELFSSGNTGINFEKYDDIPVEATGSNCPPHIESFHDVEMGEIVMGNINLTSY
TRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQASKSNGQE
NGRYGRRKQYPLSLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRELERG
CHLLVATPGRLVDMMERGKIGLDYCNYLILDEADRMLDMGFEPQIRRIVEQDTMPPKGVR
QTMMFSATFPKEIQILARDFLDDYIFLAVGRVGSTSENITQKVVWVEDTDKRSFLLDLLN
ATVIPSEVQESVTEAPEKPGKESLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRD
REEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG
LATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTTRGRSKRFSGGFGARD
YRQTPGGSANFGGGSANFGGGSRGGRSTGGRGFGGGGFGGGGNNFYSNDGYGGNYNHSGS
VDWWGN
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcatcgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacagggcggaggaactggcagacgttacattccacctcacctg
aggaacaaagatgctcccaaagcccacatttcacctgcaattttccaagttccgtctaag
cagtggccgcagccctggcaggcagagagtcagcacagaaataactgtacctcaggatgg
gaggactgtaccatcggttacccaagactggcctctcaggagcttgccctttaccatgcc
tacagtggggggtggccaacccaatgtgattcgcccggatgggacggtggccgcaacaac
ggatttgtgaatggttaccacgacaaccgcagtaatgggggatacggagggcgcggacca
cctcgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggcggaggctcgttt
actcaaccattgcagagtgcagcgttcggcaactttgaccagaaagacggcaactatggc
ggagctcccagagatgcctcctacaacagcttcggagggagaacagaccggtctaagtcg
accttcttcaacgaccgcgggacgagctccagaggacgttatgagcgtggaggctattca
ggcggtggaagcaaccgttggggggaggactccagggaggaagactggtccaagcccacc
gctcccaacgagcgtctggaaaatgagcttttctccagtggcaacaccggaataaacttt
gagaagtacgatgatattcccgtggaggccaccggctccaactgcccaccccacatcgag
agtttccacgatgtggagatgggggagatcgtcatgggcaacatcaacctgacgagctac
actcgccccaccccggtgcagaagtacgccatccccatcatcaagtccaagagagacctg
atggcctgtgcccagaccggctctggtaagacggctgccttcctgctgccggtgctgagt
cagatctataccgacggccctggagaagctctgcaggccagcaagagcaacggacaggag
aacggacgatacggccgtcgtaagcagtacccgctgtccctcgtcctggcccctaccaga
gaactggccctgcagatctatgatgaggcgcggaagtttgcgtatcgctctcgtgttcgc
ccctgtgtggtttacggaggagccgacatcggtcagcagatcagggagttggagagaggc
tgtcacctgctcgtggccacgcccggacgtctggtggacatgatggagcgcggcaagatc
ggactggactactgcaactacttgatcctggacgaggccgaccgcatgttggacatgggc
ttcgagccacagatcagacgcatcgtggagcaggacacgatgcctcccaaaggcgtccgt
cagaccatgatgttcagtgccaccttccccaaggagatccagatcctggctcgggacttc
ctggatgactacattttcctggcggtgggtcgcgtgggttccacttcagagaacatcacc
cagaaggtggtgtgggtagaggacacagacaagaggtcgttcctcctcgacctgcttaac
gccacagttattcccagtgaggttcaggaaagtgtgacagaagctccagagaaaccgggt
aaagaatcgttgactctggtgttcgtggagaccaagaagggagccgacgccctggaggac
ttcctgtaccgcgagggctacgcctgcaccagcatccatggggaccgatcccagagggac
cgagaggaggcgctgcaccagttccgctcgggacgctgccccatcttagtggctaccgcc
gtggctgctcgaggtctggacatcagcaacgtgaagcacgtcattaactttgatctgccc
agcgacatcgaggagtacgttcaccgtatcggccgtacgggacgtgtgggaaaccttggt
ctggccacgtcgttctttaacgacaaaaacagcaacataaccaaagacttgctggacatc
ttggtggaggccaagcaggaggttccctcctggctggagagtctcgcctacgagcaccag
cacaagagcaccacccgcggccgctccaagaggttctccggcgggttcggagcgagggat
taccgtcagacgcccggcggctctgccaacttcggcggcggctctgccaacttcggcggc
ggcagccgcggaggacggagcaccggaggccgtggtttcggaggaggcggcttcggtgga
ggcggcaacaacttctacagcaacgacggctacgggggcaactacaaccactccggcagc
gtggactggtggggcaactag
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