Scophthalmus maximus (turbot): 118283404
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Entry
118283404 CDS
T09850
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04382
Cornified envelope formation
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04518
Integrin signaling
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118283404 (col4a5)
04518 Integrin signaling
118283404 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118283404 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118283404 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118283404 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smau04147
]
118283404 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118283404 (col4a5)
Exosome [BR:
smau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118283404 (col4a5)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118283404 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118283404
NCBI-ProteinID:
XP_035461209
LinkDB
All DBs
Position
12:complement(7990758..8022462)
Genome browser
AA seq
1691 aa
AA seq
DB search
MSGDSGSSAPRHLAAPLLLLVLALCAVQRADAKACHGCVGSTCDCSGVKGAKGERGFPGL
TGQPGVPGFPGPEGPIGGRGEKGSDGPQGPYGPKGLRGPSGLPGFPGTPGLPGLSGQEGP
PGPRGVPGCNGTKGDRGYPGSSGIPGQQGLQGPPGLPGSKGDPGDVISTNRFGDKGAVGL
PGLPGVPGSPGPAGLQGPLGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGEPGLP
GPAGPPGQVGEQKRPPETEIQRGDKGDPGIPGQPGDPGYPGPPGPSGGNKGDKGEPGEAG
KRGKPGKDGDPGPPGFPGVKGDSGLPGPPGRDGERGLKGDRGYPGPPGVVLGGQSGGLVG
PKGEPGYPGSNGLKGDRGPTGLSGPPGQPGRPAIGGNGQPGPPGFPGERGQKGDSGAPGI
SLPGSPGRPGSPGGQGLQGPPGPPGFSSAAQNCVTGEPGRPGVQGERGYPGNSGQKGEKG
ETCVNCFTGTSSVPGPQGPAGSPGFPGTPGSPGLKGDRGFPGTSGGVGSPGSPGPQGSPG
FPGEKGDPGDAIAVSGIRGDKGDTGFPGSPGLPGLDGRSGRDGQPGSPGPKGAPGSLLVK
GERGLPGDSGAPGVPGDRGLPGPPGFGPQGPPGEKGIQGVSGRPGGPGAPGGKGEPGLAV
AEKGLPGSRGQDGEPGLSGSPGNPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGAKGFPG
IPGQPGSPGGPGRPGVDGLPGQPGLSGLKGEPGFGLPGPPGLPGVPGSKGFPGLKGDSGF
PGGPGSPGRSGFDGGPGSKGEPGIPGSPGSRGPPGPPSIGSLGVPGPPGTPGPMGPPGFP
GSNGGKGDPGPPGLDIPGLPGDRGAPGFPGSPGPAGTPGPPGGPGRDGLPGLPGNKGDMG
PMGSPGPSGGPGGPGGPGAPGLKGENGFPGRDGGPGGPGGKGERGDPGVQGPPGPSTTQL
AIKGTKGDPGLSGAPGFPGQKGISGLPGDPGLSGSDGRPGLPGPPGPKGDSGIPGSSGGP
GGPGLKGSMGEMGFPGPSGQKGLPGQSGRPGSPGQPGSSGFPGSKGEPGSAGVGPPGQSG
PKGEPGQPGFPGNSGLKGTPGSPGLPGLPGGPGVKGDPGLPGFQGSPGISGPKGLDGGPG
APGLTGAPGRPGEGGRSGAPGLPGDKGQAGRDGIPGPAGVKGEPGLPGFGGPGPSGLPGL
PGAKGDPGLSGPSGNPGFPGTKGEAGFPGSPGLPGNNGPPGPPGLALQGPKGLQGPPGPP
GRAGPSGPPGPAGPEGPRGPQGSGGVKGEKGIAGAPGQPGFPGQKGDAGVPGFPGTSGLP
GGPGIKGDIGLPGVPGFPGPKGDSGLPGGSGLPGDPGEVGLTGPPGDPGVSPTPIVVKGE
RGPPGPQGQPGSRGQPGSPGRDGLTGQPGNPGDPGTEGPPGFSGAPGRKGDTGPAGQPGQ
RGYPGPPGSDGPQGPPGLPGTASAAHGFLITRHSQGQDVPSCPDGTSSIYDGYSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITG
EGIKPFISRCSVCEAPAMVIAVHSQTIRIPSCPANWEALWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEATEMFRKPQPETLKAGNLGTR
VSRCVVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagactccgggtcgagcgcgccgcggcacctcgccgcgccgctgctgctgctc
gtcctggcgctgtgcgcggtgcagcgcgccgacgcgaaggcctgccacggatgtgtcgga
tccacttgtgactgcagcggagtgaaaggagccaagggtgaacggggtttcccgggtctc
accggacagccaggggtcccggggttccctggacccgaggggccgatcggaggcagagga
gagaagggtagcgacggacctcagggaccatatggtccaaaaggactcagagggccttca
gggttgccaggattcccaggaactccaggtctaccgggtctgtcggggcaggaaggaccc
ccgggccccagaggagtgcccggttgcaacgggacaaagggcgacagaggttacccaggg
tcctccggtatccccggacaacaaggacttcagggtccacctggtctgccaggatcaaag
ggagacccaggcgacgtgatctccaccaaccgtttcggagacaaaggagcagtgggactg
cccggattgccgggagttccgggctccccagggcccgctggtttgcaaggtccgctcggc
cctccaggacccagaggctatgagggtcgtcccggtcctcccggtccccccgggcccaag
ggaaacatgggtttgaacttccaaggacccaaaggagagaagggtgaaccaggtttgccg
ggacccgccggtcctccggggcaggtgggggagcagaagaggccgccagagacggagatt
cagagaggagacaagggtgatccaggaattcccggccaaccgggcgatccaggctatcca
gggcctcccggcccctcgggtggaaacaagggagataagggcgaaccaggagaggccggc
aaacggggcaaaccaggcaaagatggcgacccgggtcctccaggcttccctggagtcaaa
ggagattcaggattgccaggtcctccaggcagggatggagagagaggtctaaaaggagat
cgtggataccccggcccaccaggagtggtgcttggcgggcagtcaggaggtctggtcggt
cctaaaggtgagcccggataccccgggtcaaatggcctcaaaggagacagaggaccaaca
ggtttgtcaggaccccccggacaaccaggacgcccagcaattggtggcaatggtcagcct
ggacctccaggtttccctggggagaggggtcagaagggagacagtggggctccaggaatc
tctttgccaggatccccgggacgtccgggatctcctggtggccagggcctacaggggccc
cctggacctccaggcttttccagtgcagctcaaaactgcgtcaccggagagcccgggcgt
ccaggcgtgcagggagagagaggttacccaggaaactcgggccagaaaggtgagaaaggt
gaaacctgcgtgaattgctttactggcacaagttccgtcccaggaccccaaggaccggcg
ggatcacctggattccctggaactcctggcagcccaggtctcaaaggagacagaggattt
ccaggaacgtctggtggtgtcggctcccctggttcccccggtcctcagggctctccagga
ttccccggagagaagggtgacccaggtgatgcaatcgcagtcagtggtatcaggggagat
aaaggtgacactggcttccccggatcacccggtctgccaggattggatggtcggtctggt
cgtgatggacagcctggatctcctggacccaaaggagctccaggctctctgctggtgaaa
ggagaacgaggactacccggcgattcaggtgcccctggtgttccaggggacaggggtctt
cctggtccacctggctttggacctcaagggcccccaggagagaagggtattcagggtgtc
tcaggaagacctggaggccccggcgcacccggtggtaaaggtgaaccaggcctagcagtg
gcagagaaaggcttaccaggatccagaggacaggatggcgagcccggactgtcaggttca
ccaggtaacccaggtcagcccggacagcctggtttccctggtttaccaggagcaaaaggt
gatcctggactcccgggtatcggactccctggacccccaggagctaaaggattcccaggt
atccccggccagccaggatctcctggaggaccaggcagaccaggagtagatggactccct
ggccagcctggactttctggacttaagggtgaaccgggctttggacttcctggtccacct
ggtttaccaggagtccctggatctaaaggtttccccggactaaagggagattctggtttc
cctggcggccctggttcaccaggaagatctggatttgacggcggcccaggatccaaaggt
gagcccggtatacctggtagccctggatctcgtggcccacctggacccccctccattggc
tcattgggggtcccaggcccccctggaactccaggcccaatgggaccaccaggattccct
ggatcaaatggagggaaaggagaccccggccctccaggtctagacatcccaggattgcca
ggagacagaggagctccaggtttcccaggttctccaggaccagctggaacccctggacct
cctggaggtcctggacgggacggcctgcctggattgccaggtaacaaaggagacatgggt
cccatgggatctccaggaccttctggaggcccaggaggaccaggaggacctggcgctcct
ggacttaaaggtgaaaacggattcccaggtagagacggtggacccggtggtcctggcggt
aaaggagagcggggcgaccccggtgtccagggacccccgggtcccagcacgacacaatta
gccatcaagggaaccaaaggagatccaggactatcaggtgcaccaggttttccgggtcag
aaaggcatcagcggtctccctggagaccctggactttcgggatcagatggtcgcccggga
ctccccggaccaccaggtcccaaaggagattctggaatcccaggaagctcaggtggacct
ggaggacctggactaaaaggcagcatgggagaaatgggattccctggaccatcagggcag
aagggtctaccaggtcagtcgggacggccaggatcgccgggacagccaggatcatctggt
ttccctggatctaaaggtgaaccaggttctgcgggagtcggaccacctggacaatctgga
cccaagggtgagccaggccagcctgggttcccaggaaattcaggactcaaaggaactcca
ggatcacccggtctcccaggtttacctggaggaccaggcgtcaaaggtgatccaggcctc
ccaggattccaaggttctcctggtatctctgggcctaagggtcttgacggggggccaggt
gccccaggtctcactggagcacccggtagaccaggagagggtggacgatcaggagcacca
gggttgccaggagacaagggtcaggcaggtcgggatgggatcccaggaccggctggagtc
aaaggagagccaggacttcctggtttcggtggccccggtccttctgggcttccagggttg
ccaggtgctaagggagacccaggtctttccggtccctctggcaatccaggtttccctggc
actaaaggagaggctggcttccctggttcccctggtcttccaggaaacaacggccctcct
gggcctccaggactggctctgcagggcccgaaaggactccaaggtccccccggaccccct
ggacgagcaggtccctcaggtcctccaggtccagccggtcccgagggtcctcgtggaccc
caaggaagtggcggcgttaagggagagaagggtattgccggcgctcccggccagcccggc
ttccccggacagaagggagacgccggtgttccaggattccctggtacctctggtcttccc
ggcggccccggtataaagggagacatcggtctgcctggcgttcctggattccctggaccg
aagggagactccggacttcccggtggcagcggtcttcctggagatcctggagaagttgga
cttactggccctcccggtgatcccggtgtttctccgactcccattgtggtgaagggagag
cgaggaccccctggtcctcagggccagcctggttctcggggccagcctgggtctcctgga
cgcgacggactcaccggtcaacctggtaaccctggagatcctggaacggagggtccgcct
ggcttcagcggcgcacctggcaggaagggagacactggacctgcaggccagcccggtcag
cgtggctacccgggtccccccggttcagacggtccacagggcccccctggtcttccggga
acagcctctgcagcccacggcttcctgatcacgagacacagccagggtcaggatgtgccc
agctgtcccgacgggacgagctccatctacgacggatactccctgctctacgtgcagggc
aacgagagggcacacggacaagacctcggcacggcgggcagctgcctgcgccggttcagc
accatgcccttcatgttctgcaacatcaacaacgtctgcaactttgcctcccgcaacgac
tactcctactggctgtccacgccggagcccatgcccatgagcatggcccccatcaccggg
gagggcatcaagccgttcatcagcaggtgttcggtgtgtgaagctccggccatggtgatc
gcagtccacagtcagaccatccggattccctcgtgccctgcgaactgggaagctctgtgg
atcggatactccttcatgatgcacaccagtgcgggtgccgagggctccggtcaggccctg
gcctcccctggctcctgcctggaggagttccgcagcgctcccttcatcgagtgccacggc
agggggacgtgcaactactacggcaactcctactccttctggctggccacagtagaagcc
actgagatgttcaggaagccccagccggagactctcaaggcgggaaacctggggacgcgc
gtcagccgctgcgtggtctgcatgaagaggacgtaa
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