Scophthalmus maximus (turbot): 118283404
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Entry
118283404 CDS
T09850
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118283404 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118283404 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118283404 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smau04147
]
118283404 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118283404 (col4a5)
Exosome [BR:
smau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118283404 (col4a5)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118283404 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118283404
NCBI-ProteinID:
XP_035461209
LinkDB
All DBs
Position
12:complement(7990758..8022462)
Genome browser
AA seq
1691 aa
AA seq
DB search
MSGDSGSSAPRHLAAPLLLLVLALCAVQRADAKACHGCVGSTCDCSGVKGAKGERGFPGL
TGQPGVPGFPGPEGPIGGRGEKGSDGPQGPYGPKGLRGPSGLPGFPGTPGLPGLSGQEGP
PGPRGVPGCNGTKGDRGYPGSSGIPGQQGLQGPPGLPGSKGDPGDVISTNRFGDKGAVGL
PGLPGVPGSPGPAGLQGPLGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGEPGLP
GPAGPPGQVGEQKRPPETEIQRGDKGDPGIPGQPGDPGYPGPPGPSGGNKGDKGEPGEAG
KRGKPGKDGDPGPPGFPGVKGDSGLPGPPGRDGERGLKGDRGYPGPPGVVLGGQSGGLVG
PKGEPGYPGSNGLKGDRGPTGLSGPPGQPGRPAIGGNGQPGPPGFPGERGQKGDSGAPGI
SLPGSPGRPGSPGGQGLQGPPGPPGFSSAAQNCVTGEPGRPGVQGERGYPGNSGQKGEKG
ETCVNCFTGTSSVPGPQGPAGSPGFPGTPGSPGLKGDRGFPGTSGGVGSPGSPGPQGSPG
FPGEKGDPGDAIAVSGIRGDKGDTGFPGSPGLPGLDGRSGRDGQPGSPGPKGAPGSLLVK
GERGLPGDSGAPGVPGDRGLPGPPGFGPQGPPGEKGIQGVSGRPGGPGAPGGKGEPGLAV
AEKGLPGSRGQDGEPGLSGSPGNPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGAKGFPG
IPGQPGSPGGPGRPGVDGLPGQPGLSGLKGEPGFGLPGPPGLPGVPGSKGFPGLKGDSGF
PGGPGSPGRSGFDGGPGSKGEPGIPGSPGSRGPPGPPSIGSLGVPGPPGTPGPMGPPGFP
GSNGGKGDPGPPGLDIPGLPGDRGAPGFPGSPGPAGTPGPPGGPGRDGLPGLPGNKGDMG
PMGSPGPSGGPGGPGGPGAPGLKGENGFPGRDGGPGGPGGKGERGDPGVQGPPGPSTTQL
AIKGTKGDPGLSGAPGFPGQKGISGLPGDPGLSGSDGRPGLPGPPGPKGDSGIPGSSGGP
GGPGLKGSMGEMGFPGPSGQKGLPGQSGRPGSPGQPGSSGFPGSKGEPGSAGVGPPGQSG
PKGEPGQPGFPGNSGLKGTPGSPGLPGLPGGPGVKGDPGLPGFQGSPGISGPKGLDGGPG
APGLTGAPGRPGEGGRSGAPGLPGDKGQAGRDGIPGPAGVKGEPGLPGFGGPGPSGLPGL
PGAKGDPGLSGPSGNPGFPGTKGEAGFPGSPGLPGNNGPPGPPGLALQGPKGLQGPPGPP
GRAGPSGPPGPAGPEGPRGPQGSGGVKGEKGIAGAPGQPGFPGQKGDAGVPGFPGTSGLP
GGPGIKGDIGLPGVPGFPGPKGDSGLPGGSGLPGDPGEVGLTGPPGDPGVSPTPIVVKGE
RGPPGPQGQPGSRGQPGSPGRDGLTGQPGNPGDPGTEGPPGFSGAPGRKGDTGPAGQPGQ
RGYPGPPGSDGPQGPPGLPGTASAAHGFLITRHSQGQDVPSCPDGTSSIYDGYSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITG
EGIKPFISRCSVCEAPAMVIAVHSQTIRIPSCPANWEALWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEATEMFRKPQPETLKAGNLGTR
VSRCVVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagactccgggtcgagcgcgccgcggcacctcgccgcgccgctgctgctgctc
gtcctggcgctgtgcgcggtgcagcgcgccgacgcgaaggcctgccacggatgtgtcgga
tccacttgtgactgcagcggagtgaaaggagccaagggtgaacggggtttcccgggtctc
accggacagccaggggtcccggggttccctggacccgaggggccgatcggaggcagagga
gagaagggtagcgacggacctcagggaccatatggtccaaaaggactcagagggccttca
gggttgccaggattcccaggaactccaggtctaccgggtctgtcggggcaggaaggaccc
ccgggccccagaggagtgcccggttgcaacgggacaaagggcgacagaggttacccaggg
tcctccggtatccccggacaacaaggacttcagggtccacctggtctgccaggatcaaag
ggagacccaggcgacgtgatctccaccaaccgtttcggagacaaaggagcagtgggactg
cccggattgccgggagttccgggctccccagggcccgctggtttgcaaggtccgctcggc
cctccaggacccagaggctatgagggtcgtcccggtcctcccggtccccccgggcccaag
ggaaacatgggtttgaacttccaaggacccaaaggagagaagggtgaaccaggtttgccg
ggacccgccggtcctccggggcaggtgggggagcagaagaggccgccagagacggagatt
cagagaggagacaagggtgatccaggaattcccggccaaccgggcgatccaggctatcca
gggcctcccggcccctcgggtggaaacaagggagataagggcgaaccaggagaggccggc
aaacggggcaaaccaggcaaagatggcgacccgggtcctccaggcttccctggagtcaaa
ggagattcaggattgccaggtcctccaggcagggatggagagagaggtctaaaaggagat
cgtggataccccggcccaccaggagtggtgcttggcgggcagtcaggaggtctggtcggt
cctaaaggtgagcccggataccccgggtcaaatggcctcaaaggagacagaggaccaaca
ggtttgtcaggaccccccggacaaccaggacgcccagcaattggtggcaatggtcagcct
ggacctccaggtttccctggggagaggggtcagaagggagacagtggggctccaggaatc
tctttgccaggatccccgggacgtccgggatctcctggtggccagggcctacaggggccc
cctggacctccaggcttttccagtgcagctcaaaactgcgtcaccggagagcccgggcgt
ccaggcgtgcagggagagagaggttacccaggaaactcgggccagaaaggtgagaaaggt
gaaacctgcgtgaattgctttactggcacaagttccgtcccaggaccccaaggaccggcg
ggatcacctggattccctggaactcctggcagcccaggtctcaaaggagacagaggattt
ccaggaacgtctggtggtgtcggctcccctggttcccccggtcctcagggctctccagga
ttccccggagagaagggtgacccaggtgatgcaatcgcagtcagtggtatcaggggagat
aaaggtgacactggcttccccggatcacccggtctgccaggattggatggtcggtctggt
cgtgatggacagcctggatctcctggacccaaaggagctccaggctctctgctggtgaaa
ggagaacgaggactacccggcgattcaggtgcccctggtgttccaggggacaggggtctt
cctggtccacctggctttggacctcaagggcccccaggagagaagggtattcagggtgtc
tcaggaagacctggaggccccggcgcacccggtggtaaaggtgaaccaggcctagcagtg
gcagagaaaggcttaccaggatccagaggacaggatggcgagcccggactgtcaggttca
ccaggtaacccaggtcagcccggacagcctggtttccctggtttaccaggagcaaaaggt
gatcctggactcccgggtatcggactccctggacccccaggagctaaaggattcccaggt
atccccggccagccaggatctcctggaggaccaggcagaccaggagtagatggactccct
ggccagcctggactttctggacttaagggtgaaccgggctttggacttcctggtccacct
ggtttaccaggagtccctggatctaaaggtttccccggactaaagggagattctggtttc
cctggcggccctggttcaccaggaagatctggatttgacggcggcccaggatccaaaggt
gagcccggtatacctggtagccctggatctcgtggcccacctggacccccctccattggc
tcattgggggtcccaggcccccctggaactccaggcccaatgggaccaccaggattccct
ggatcaaatggagggaaaggagaccccggccctccaggtctagacatcccaggattgcca
ggagacagaggagctccaggtttcccaggttctccaggaccagctggaacccctggacct
cctggaggtcctggacgggacggcctgcctggattgccaggtaacaaaggagacatgggt
cccatgggatctccaggaccttctggaggcccaggaggaccaggaggacctggcgctcct
ggacttaaaggtgaaaacggattcccaggtagagacggtggacccggtggtcctggcggt
aaaggagagcggggcgaccccggtgtccagggacccccgggtcccagcacgacacaatta
gccatcaagggaaccaaaggagatccaggactatcaggtgcaccaggttttccgggtcag
aaaggcatcagcggtctccctggagaccctggactttcgggatcagatggtcgcccggga
ctccccggaccaccaggtcccaaaggagattctggaatcccaggaagctcaggtggacct
ggaggacctggactaaaaggcagcatgggagaaatgggattccctggaccatcagggcag
aagggtctaccaggtcagtcgggacggccaggatcgccgggacagccaggatcatctggt
ttccctggatctaaaggtgaaccaggttctgcgggagtcggaccacctggacaatctgga
cccaagggtgagccaggccagcctgggttcccaggaaattcaggactcaaaggaactcca
ggatcacccggtctcccaggtttacctggaggaccaggcgtcaaaggtgatccaggcctc
ccaggattccaaggttctcctggtatctctgggcctaagggtcttgacggggggccaggt
gccccaggtctcactggagcacccggtagaccaggagagggtggacgatcaggagcacca
gggttgccaggagacaagggtcaggcaggtcgggatgggatcccaggaccggctggagtc
aaaggagagccaggacttcctggtttcggtggccccggtccttctgggcttccagggttg
ccaggtgctaagggagacccaggtctttccggtccctctggcaatccaggtttccctggc
actaaaggagaggctggcttccctggttcccctggtcttccaggaaacaacggccctcct
gggcctccaggactggctctgcagggcccgaaaggactccaaggtccccccggaccccct
ggacgagcaggtccctcaggtcctccaggtccagccggtcccgagggtcctcgtggaccc
caaggaagtggcggcgttaagggagagaagggtattgccggcgctcccggccagcccggc
ttccccggacagaagggagacgccggtgttccaggattccctggtacctctggtcttccc
ggcggccccggtataaagggagacatcggtctgcctggcgttcctggattccctggaccg
aagggagactccggacttcccggtggcagcggtcttcctggagatcctggagaagttgga
cttactggccctcccggtgatcccggtgtttctccgactcccattgtggtgaagggagag
cgaggaccccctggtcctcagggccagcctggttctcggggccagcctgggtctcctgga
cgcgacggactcaccggtcaacctggtaaccctggagatcctggaacggagggtccgcct
ggcttcagcggcgcacctggcaggaagggagacactggacctgcaggccagcccggtcag
cgtggctacccgggtccccccggttcagacggtccacagggcccccctggtcttccggga
acagcctctgcagcccacggcttcctgatcacgagacacagccagggtcaggatgtgccc
agctgtcccgacgggacgagctccatctacgacggatactccctgctctacgtgcagggc
aacgagagggcacacggacaagacctcggcacggcgggcagctgcctgcgccggttcagc
accatgcccttcatgttctgcaacatcaacaacgtctgcaactttgcctcccgcaacgac
tactcctactggctgtccacgccggagcccatgcccatgagcatggcccccatcaccggg
gagggcatcaagccgttcatcagcaggtgttcggtgtgtgaagctccggccatggtgatc
gcagtccacagtcagaccatccggattccctcgtgccctgcgaactgggaagctctgtgg
atcggatactccttcatgatgcacaccagtgcgggtgccgagggctccggtcaggccctg
gcctcccctggctcctgcctggaggagttccgcagcgctcccttcatcgagtgccacggc
agggggacgtgcaactactacggcaactcctactccttctggctggccacagtagaagcc
actgagatgttcaggaagccccagccggagactctcaaggcgggaaacctggggacgcgc
gtcagccgctgcgtggtctgcatgaagaggacgtaa
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