Scophthalmus maximus (turbot): 118283460
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Entry
118283460 CDS
T09850
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smau03016
]
118283460 (tarbp1)
03036 Chromosome and associated proteins [BR:
smau03036
]
118283460 (tarbp1)
Enzymes [BR:
smau01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
118283460 (tarbp1)
Transfer RNA biogenesis [BR:
smau03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
118283460 (tarbp1)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118283460 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
118283460
NCBI-ProteinID:
XP_035461330
LinkDB
All DBs
Position
10:complement(13000092..13012310)
Genome browser
AA seq
1644 aa
AA seq
DB search
MNSVLIDAILRSSPDIERLLESLSWPSGSWPETERVEALAAFVEGLGPPLADPDATPLSA
AKRASVRVQLESLVWTRCLPLLAAISAEPGEAARRRALTAAACRLVSACVPLCGEDVPGR
VARSVLPSLSLHGGEEEEGEEPPGPGRLGVEVASELVAALAPSLAADEHLTLAIISAALS
CVRARPDALVSGATVRLLLTLLNCCGGGGARLNNALTLVLGDLCSWHRADRSPVVTERAL
LCLTAISDHLLNPHSLPCSSSSSSSSSSSSSSSSAACEPHPRLSLQFWRMLQDGLTHRDG
VSRKRALYLLKRGVALSEGQQVDCPLSPSREGGETLFRWAPNRSKLLREFWEDYALVMET
LEENQVHVVRPVLNRIDTLIQTTVNDGQGRGLFHPSWLLCVYQRMFHSENKSLMREGVCH
LLELQVLQQPPFALAFSQFIVGPFMDVLSESSLFHRSVGQSVGDCPELGAKLQVFMATFF
SSLPSEHRGCVLLQLIQQLGSKHWCAVPLLFLSQALAKLPPSPLLGVDGLAALREVLCCT
MITHQVSLRGAAQCFLLNSALCLTDVSAASLDDIFSFLMYFRADESLCRGTHIWNQVCAW
LSDNEGSFKPRIVDGGDSAGSATKKETVRGYVQEEMHAYLRVPASTGQTERLPDPKEADK
LARAILLCVDMEKSRPGTEIGNTLESLLSPLLDTLSRVSTNIYLPLRKSDKSLQLVLRLL
QLGRTPRSVGGEQGETAIVSMEKLVFKLVDPIQDFISRRLCGELQELFDVERAELYLSVL
TQLVDMCSSAPQHHLKVGQNYIPKLIKHSLWVLQEPSQQIPSVAHQVARAVAMASLATVC
GLVEQEVIGTRSEAISALEALNDYFYSSQPCQSSLGNFNKRLLKPQTGDSLCDLGVPGSL
LQDWGRIAASFMRDQWICLSFLIKAVGIPESSRSPDTLKAALSCSVEALALLPSDLVLPA
LAYMETVLPQLLIHEEALCVEAVTLSWELVQGLSNNAHDFWPALKGFVSMAFHHKVLELS
HSRALTLVATLKQIATELIELSQSKSGVFGVLLQHCCQTWLPADRGGGSSDGADTAFSSV
FSHINMLTEACVYGPVFRRDQRLIQDIQTYVEQLGEECAGDVIVTSDNRDDQFPRTCVLA
FLSRLESSNLQHETLMEDLVMALLKKDNDISKSKVRYYSNSLQHRVKNRVWQTLLLLLPK
LREEFVATLLNRVFEAGFCSNQASVKYLIEWMMILILVRHPKHMDSFWGCFSMDHEKTKT
SVCTFLSVLVHFNIILPQLKEKAAQLRKALDIILQWCFNHNFSVRLYALLALKRVWSLAE
ARAEEGAGGLGGLSTVIKACLNQAEAMQSTGNAKKNWIRIQEHFFFGAFHPIRDHSVETI
FHTFPSLSELADDEWIPPWKFEKLACSSESPSLPLTNPTPDLSQLQPGDWIQQDKSEQDK
EERWAEVQKKITPWRLGIQEQEPELQLIPQQRAARLGKLHGALLVVASLIDKPTNLGGLC
RTCEIFGASALVLDTLRHVGDKLFQSLSVSSELWLPLLEVKPLELSDFLQVKKSEGYCIV
GVEQTANSQSLQDYKFPEKTLLLLGNEREGIPANLLQMLDVCVEIPQQGVIRSLNVHVSA
ALLIWEYTRQHLASGSAEVDAKRS
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagttttaatcgacgcgattctgcgcagctctccggacatcgagcgtctcctc
gagtctctgtcctggccgagtgggtcgtggccggagacggagcgggtcgaggcgctcgcg
gcgttcgtcgaagggctcggacccccgctggcagaccccgacgcgactccgctctcggct
gcgaagagggcgagtgttcgcgtccagctcgagtcgctcgtctggacgcggtgtctgccg
ctgctcgccgcaatatcggccgagcccggcgaagccgcgcggcgcagggcgctcaccgcc
gccgcctgccgcctggtgagcgcctgcgtcccgctgtgcggcgaggatgtgccggggcgc
gtggctcggtccgtcctgccgtctctgagtctgcacgggggggaggaggaggagggggag
gagccgcccggcccgggacgtctcggcgtggaggttgcgagcgaactagtggccgctctc
gcaccgtctctggccgcggatgaacatctcaccctcgccatcatctccgccgcgctgtcg
tgcgtcagagcacggcccgatgcgctggtctccggggccacagtccggctcctcttgacg
ctcctgaactgctgcggcggcggcggcgcgcggttgaacaacgcgctcacgttggtcctg
ggcgacctgtgcagctggcaccgcgctgaccgctcccctgtggtcacagagcgggctctg
ctgtgtctcaccgccatttcagaccacctgctgaaccctcacagcctgccctgctcatcc
tcctcctcctcctcatcatcatcatcatcatcatcatcctccgccgcctgtgagccacac
cctcgcctgtccctccagttctggaggatgcttcaggatggactgacgcaccgagacggc
gtgtcacgtaagagggcgttgtacctgctcaaaaggggcgtggccctgtccgaggggcag
caggtggactgtcccctctctccatcccgcgaaggtggtgagaccttgttcaggtgggcc
cccaacaggagcaagctactcagagagttctgggaggattacgcgctggtgatggagaca
ctggaggaaaaccaggttcatgtcgtccggccagttctaaacagaatagacacgttgatc
caaacaacagtgaatgatggtcaaggtcgaggcctcttccatccctcctggctgctgtgt
gtgtaccagcgcatgttccacagtgagaataaatccctgatgagagagggagtgtgtcac
ctgctcgagctgcaggtcctccagcagccgcccttcgctctggccttttctcagtttatt
gttggcccttttatggatgttctgtctgaatcttcactcttccataggtcagttggtcag
agtgtaggagattgtcctgagcttggagcgaaactccaagtcttcatggccaccttcttc
agtagcctcccatcagagcacagaggttgtgtgttgctgcagctgattcagcagctgggc
tcgaagcattggtgcgccgtgcccctcctcttcctctcccaggctctagccaaacttccc
ccaagtccactgctgggggtcgacggactcgctgccctgagggaggtgctgtgctgcacc
atgatcacacatcaggtttcgttacgaggagctgcccagtgcttcctgttgaacagcgcc
ctctgtctcacagatgtgagcgccgcaagcctagatgacatctttagtttcctgatgtat
ttccgtgccgacgagtcactgtgcagagggacgcacatctggaatcaggtatgtgcctgg
ctatcggacaacgaaggcagtttcaagcccaggatcgtggacggcggtgattccgctggt
tctgccacaaagaaagaaactgtaagaggttatgttcaagaggagatgcacgcctatctc
cgagttccagctagcacaggtcagactgagaggttgcctgaccctaaagaggccgataag
ttggccagggctattctgttgtgtgtggacatggagaagagtcggcctggcacagagatc
ggcaacactctggagtcattactctctccactgctggacaccctgagcagagtcagcacc
aacatctacctgcctctgcgcaagagtgacaagagcctgcagcttgtgctccgactgctc
cagctcggacggacgccaagaagtgtcggaggggagcaaggcgagaccgcaatcgtttcc
atggagaagctagtttttaaacttgtcgacccaatccaggactttatctcgaggcggctg
tgtggagagctgcaggagctatttgacgtggagcgggccgagctgtatctgagtgtcctg
acgcagctggtggacatgtgcagttctgcaccgcagcaccatctcaaagttgggcagaat
tatattcctaaactcattaagcacagcctctgggtcctgcaggaaccaagccagcagatc
ccttccgtggcacaccaggttgcaagagcggttgctatggcgtccctggccacggtttgt
ggtctcgtggagcaggaagtgattggcacgagatcagaggccatttctgctctggaagcc
ctgaatgactacttctacagttcacagccgtgtcagtcatcactggggaacttcaacaaa
cgcctgctgaaaccacagacaggagactctttatgtgatctgggagtgccgggttctctg
ctgcaggactggggacgtatcgctgccagctttatgcgggaccagtggatttgtctgagc
ttcctgattaaggcggttgggattcctgagagttccagatcgccggacactctcaaagct
gcgctgagctgcagtgtggaggccctggcactgctacccagtgacctggtgctgcctgcg
ctcgcctatatggagacggtgctgccacaattactaatccacgaggaggcgctgtgtgtg
gaggctgtgactctgagctgggagctggtgcagggactgagcaataatgcccacgacttc
tggccagccctgaaaggctttgtctccatggctttccaccataaggtgctcgagctgtcc
cacagtcgcgctctgacacttgtggccaccttgaaacagatcgccaccgagctcatcgag
ctgtctcagtcgaaaagtggagtattcggagtgctgcttcaacactgttgtcagacgtgg
ttgcccgcagaccgaggcggcggcagcagcgatggagccgacaccgcattttctagtgtt
ttcagccacatcaacatgctcactgaggcctgtgtctatggaccagtgttcagaagagac
caacggctcatccaggacattcaaacctacgtggagcagcttggcgaagagtgtgctggt
gatgtcatagttacaagtgataacagggacgatcagttcccccgcacatgtgtgttggct
ttcctcagccgcctggagtcttctaatctacagcatgaaacactgatggaggatctagtt
atggctttgttgaaaaaggataatgacatatcaaagtcaaaggtgcgttactatagcaac
tccctgcaacatcgtgtcaaaaacagagtctggcaaacactgctgctgttgctgcccaaa
ctcagagaggagtttgtcgccacactgctgaaccgtgtgtttgaagctggattctgcagc
aatcaggcttcggtcaagtacctgatcgaatggatgatgattctgatcctcgttcgccat
ccaaaacacatggacagcttctggggctgcttcagcatggatcatgaaaagaccaagacg
agcgtctgcaccttcctgtcagtcctcgtacatttcaacatcatccttcctcaactcaag
gagaaggcagcacaattgcgtaaagcgttggacatcatcctgcagtggtgtttcaaccac
aacttcagcgtgcgcctgtacgccctcctggccctgaagagggtgtggagcttggcagag
gcccgggcagaggaaggggccggtggtttgggagggttgtccaccgtcatcaaggcctgt
ttgaaccaggccgaggccatgcaaagcactggaaacgccaagaaaaactggataaggatt
caggagcacttcttctttggtgcgtttcaccctatcagagatcacagtgtagagaccata
ttccacacctttcctagtctgtcagagttggctgatgatgagtggattccaccatggaag
tttgagaagctggcgtgttcctccgaaagtccatctcttcccttgacaaatcctactcct
gacctgagccagcttcagcccggagactggatccagcaagacaaaagtgagcaggacaag
gaggagcgctgggccgaggtgcagaagaagatcactccctggaggttggggatccaggag
caggagcccgaacttcagctgattccacagcagagggccgctcgactgggcaaactgcac
ggcgccctgctggtggttgcctctctcatagacaaacccactaatttaggaggtctgtgc
aggacgtgtgagatatttggtgccagtgctctggttctggataccctccgccacgtcggt
gacaaactcttccagtccctgagcgtctcgtctgagctctggcttcctctgttggaggtg
aagccgttggagctcagtgacttcctgcaggtgaagaagagtgaaggttactgtattgtc
ggagtggagcagacagccaacagtcagagtctccaggactacaagttccctgagaagacc
cttttacttctgggcaatgaacgggaaggtattcctgccaacctgctccagatgttggat
gtttgtgtggagatccctcaacaaggggtcatccgctccctcaacgtgcatgtgagcgcc
gccctgctgatttgggaatacacgcggcagcatctcgcctccggttcagctgaagtggac
gcgaagcgcagctga
DBGET
integrated database retrieval system
