Scophthalmus maximus (turbot): 118283877
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Entry
118283877 CDS
T09850
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118283877 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smau03400
]
118283877 (msh6)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118283877 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
118283877
NCBI-ProteinID:
XP_035462188
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All DBs
Position
10:12240368..12246885
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AA seq
1384 aa
AA seq
DB search
MSKQSSLFNFFSKSPPQVSKPKPKPSPSPAEADLPSSVEKSNSSPKEQAKQTPQEQQAAK
TNKAKPKSESKSAKGGFKKLFGDNAPTTKESSSTCSFSAGALVWAKLEGHPWWPCMVVPQ
PLTGQQMRGRGRKQRIHVHFFDEPPTRGWVSIKFIREYQGSDSSDAKIGGVFFSGKPVIR
HAMELADGVMFDSPDKRLKMPLCTDPSDEEEDEDEDMEVDKSVSDEEVSDEDDQKNEEVK
SSKVSRRSSRALTEKSNNAKRRRIVVASDSDDSGEEFKPEHAASSSDDEEEEAAVSSEGE
EGESTQESEVESPIKPAKRKRPAEKSASTKAKVATPPPAAPKRAPAPLTADTKSRLSAFS
APDSFESQANGSGDSGGATVWDHDKLEWLQEGRRKDSRRRRQTEDDYDPTTLYVPEDFLN
RSSPGMRRWWQLKSEMFDTVIFYKVGKFYELYHSDAVIGVNELGLTFMKGAWAHSGFPEI
GFGRFSDVLVQKGYKVARVEQTETPDMMEARCKTMLKPTKFDRVVRREVCRIITRGTQTY
SVLDGAPSESQSKFLLSLKEKAGEESSGQHRTYGVCFVDTSVGYFHVGQFPDDRHCSRLR
TLISHYAPVEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSDEDYF
KDTTGKEQGTGSHFLPPLLKKMTSGSDSLCLTPKEGCELALSALGGCIFYLKKCLVDMEL
LSMANFEEYVPVDVEMEKAAGPASFFAKTSQRMVLDGVTLANLEIFQNGAGGTEGTLMER
LDTCSTPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLMGAQAQATEVSDLLKKLPDLERL
LSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSTLEGFKTMQEIISVLSPVSGE
FRSSLLRQIVSLKSEEDGLFPDLSVELRRWETAFDHQKARTTGVITPKAGFDPEFDQALT
GVKNCEQALQDYLDRQKKRLGCKSMAYWGTGRNRYQMEVPDSFSERNIPEEYEVKSTKKG
WKRYVTQETERLFSELQGFEEKRDAALKDCMRRLFFNFDKDYRDWKTGVECMAVLDVLLA
LSRYSQGGDGAMSRPQVVLPEEYDQVEPFVDLVGSRHPCVTKTFFGDDFIPNDVFIGCPG
SGENSDEKGHALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAETLRFTPVDRVFTR
LGASDHIMAGESTFFVELSETASILHHATTHSLVLLDELGRGTATYDGTAIASAVVKELA
EKICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPK
SYGFNAARLASLPEEVIQSGHRKAREFEKSTICLRLFKKLCQFAEDATRDNTHFASLLQM
LNSL
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcaaagctcgcttttcaattttttctccaagtctccgccgcaggtgtccaag
ccgaagccgaagccgagtccctctccggccgaggcagacctgccttcctcggtggagaag
tccaactcctccccgaaggagcaagctaaacagacgccacaggaacaacaagcggccaag
accaacaaggccaaaccgaagagcgagtccaagtctgcgaaaggaggattcaagaaactg
ttcggcgacaatgccccgacgactaaagaaagcagctccacatgctcattcagtgccggt
gcccttgtgtgggcaaaactggagggacacccctggtggccttgcatggtggtaccccaa
cccctgacaggacagcagatgagaggccgtggtcgaaaacagcgcatacatgtccatttc
tttgatgaaccccctacgagaggatgggtcagcatcaaatttatccgagagtaccaaggc
tctgacagcagtgatgctaaaatcggaggggtgttcttcagcggcaagccagtaatccgt
cacgcgatggagctcgctgacggagtcatgtttgacagccctgataaaagattaaagatg
cctctctgcacagatccatctgatgaggaagaagatgaggatgaagacatggaggttgac
aagtctgtgtctgatgaagaggtcagtgatgaggatgaccagaaaaatgaggaagtgaag
tcatccaaagtcagtcgccgttcatcccgggctttaacagaaaagagcaacaatgccaag
cggcgtcgcattgtcgttgcctcagacagtgacgactcgggcgaggaattcaagccagag
catgctgcgtccagcagtgacgatgaagaggaagaagcagcggtgagtagtgaaggggag
gaaggggagagcacacaagagtccgaagtagaaagccccatcaagcctgcgaagcgcaaa
cgtcctgcggagaagtctgctagtacaaaagccaaagtggccactcccccgcctgctgcg
cccaaacgagctccggcacctctcaccgccgacaccaagtctcgcttgtccgccttctct
gcccccgacagctttgagagccaggcaaatggttcgggcgacagtggaggcgcaacagtt
tgggaccatgacaaactggagtggttgcaggaaggcaggaggaaagacagccgaaggcgg
cgacagacggaggatgactacgatcccaccaccctgtacgtgcctgaagactttctaaac
aggagtagtcctggtatgcgtcgctggtggcagctgaagtctgagatgtttgacacggtg
atcttctacaaggtggggaagttttatgagctctaccattccgatgctgtgattggagtc
aacgagctggggctgactttcatgaagggggcctgggcgcactcaggctttccagagatc
gggtttggacgtttctcagatgtactggtccagaaaggctacaaggtggctcgagtggag
cagacggagaccccagacatgatggaagcacgctgtaagaccatgctaaagcccacaaag
ttcgaccgtgtggtgaggagagaggtgtgccggatcatcacgcgcggtacccaaacctac
agtgtgttggacggtgcaccttcagagagtcagagcaagttcctgctgagtttaaaggag
aaggcgggagaggaaagctctggtcaacaccgcacctacggagtctgcttcgtggatacc
tccgtgggttattttcacgttggccagttccccgacgatcgacactgctcacgcctgcgc
accctgatttcacactatgcccctgttgaggtgctctttgagagggggaacccatctgtt
gaaacgcgcaaaatactcaaggcctccctgtcctccgctctgcaggaaggactcaatgca
ggaacacagttctgggatgcacagaagactcttaaaaccctctcggatgaagactacttc
aaagacaccactggcaaggagcagggaactgggagccattttctcccccctcttctgaag
aagatgacctccgggagtgattccctgtgccttactcccaaggagggctgcgagctggca
ctgtcagcactgggcggatgcattttctacctgaagaaatgtctggtagacatggagctg
ctctccatggccaactttgaagaatatgtccccgttgatgtcgagatggagaaagccgct
ggacctgccagtttctttgccaagactagtcagcgaatggtccttgatggagtgacgctg
gcaaacttggaaatctttcagaacggggcaggaggaacagaggggacgctgatggagcgt
ttggacacgtgctcgaccccctttggcaagaggctgctgaagcagtggctctgcgctccg
ctgtgtaaccccacgtccataagggacagactggacgcggtcgaggacctgatgggagct
caggcccaggctactgaggtttcagacctgctgaagaaactcccagatttggagcgtctc
ctgagcaaaatccacagcatcggtactcccctgaagggccaggaccaccctgacagcagg
gcagttctctacgaggaggtcacctacagcaagcgcaagatagcagacttcctttccaca
ctggagggtttcaaaactatgcaggagattatttctgtcctctctccagtttccggtgaa
tttcgctcctcgttgcttcgtcaaattgtcagtcttaaaagtgaggaggatggcctcttt
cccgacctctctgtggaactcaggcgctgggagacggctttcgaccaccagaaggcccgc
accactggtgtcattaccccgaaggctggctttgaccccgagttcgaccaggccctgacc
ggggtgaagaactgtgaacaagcgctgcaggattacctggacagacagaagaagagactc
ggctgtaagagcatggcctactggggaacggggcggaaccgctaccagatggaggtcccc
gacagcttctccgagaggaatattcccgaagagtatgaggtgaagtccacaaagaaagga
tggaagcgctatgtgacgcaggagactgagcgactgttctcagagctgcagggatttgag
gagaagagggatgcggccctgaaggactgcatgaggaggctcttcttcaactttgacaag
gactacagagactggaagactggcgtggagtgcatggcagtgcttgatgtactgctggcc
ttgtcacgctacagtcaaggtggagacggagcaatgtccaggccacaggtggtgctccca
gaggagtatgaccaggtggagcccttcgtcgacctcgtcggatcccgccacccctgtgtc
accaagacctttttcggtgacgacttcattcccaatgatgtcttcattggctgccccggc
agtggtgagaacagtgatgagaaaggtcacgccttgtgtgtactcgtcacggggccaaac
atgggcggaaagtccactctcatgagacagtgtgggcttgtgatcatcctcgcccagctg
ggttgctacgttcccgccgaaaccctgcggttcacacccgttgacagggtcttcactcgc
ctgggagcctcagatcacatcatggctggagagagtaccttctttgtggagttgagcgag
actgccagcatcctgcaccacgccaccactcactcactcgtcctcctggatgaattagga
aggggcacagccacatatgacggcacagcgatcgccagtgctgttgtgaaggagctcgct
gagaagatctgctgtcgcaccctcttctccacacattaccactctctggtggaggattac
accaacaaccccgctgtgcggttgggccacatggcgtgcatggtggagaacgaatgcgag
gatccaagtcaagaaaccatcacgttcctctacaaattcatcaccggtgcttgtcccaag
agctacggcttcaacgctgctcgacttgccagcctgccagaggaagtcattcagtcggga
cacaggaaggccagagagtttgagaagagcaccatctgcctcagactgttcaagaagctc
tgtcagtttgctgaggatgctacacgggacaacacacactttgcttcactccttcagatg
ctcaacagcctgtag
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