Scophthalmus maximus (turbot): 118284284
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Entry
118284284 CDS
T09850
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118284284
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118284284
NCBI-ProteinID:
XP_035462945
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Position
10:17566858..17593079
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AA seq
1781 aa
AA seq
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MDELTRQMDFSGDLSGERVVTETITTTTRLTSLPPKGTSGSNHRNMSSTAGGLGLEKNVL
TQNSGGTYFSSSSVGVNTGYSSSSGVYLGGDSSGGGDGGGSYIDGEGYGSGGGGGGGGGG
GSYLVSSVSKVRSSSSSGGRRAQAGGSSGGLSPGFRERKILSSRSGGYDGSSSANSSPEF
TRKDYGIYCSSSTRGRSESRESEIRARLQSASPTACRWTELDDVKKLLKGRSCSVSPTRS
SSASTTLPVPKKASAEAKTVSVATQSVSTSFSGSGVRSGGFHTIDASGLYDTGLASGQFD
NGVKSGQYDVTLISGQYDTGVKSGQFDTGVKSGQYDSSMKSGQYDIGLKSGQYDTGVKSG
QSYTSMRSGQYDTSLRSGQYDASLRSGQYDTGLRTGEYDTLDAALPSFSWSTATLPSAST
TVVPGNTGSYTYQVSTNNRSGGMAPLSTTSPSSLSVYGFQNNLAPTTGSVLTTSGANISG
HVGGYGVQKNVSTGSGVVSSAVSTTTRSQTEDAYKNKFLISDKENVQARRETETLILAKD
SGKQFTSSSSVHIGGSLSGDSIKKEKLIYSETAPLKSETGNSYYGSSGVVMKDKATYAEI
HRDSGVFGGGGFCCCSDACCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVANL
EAESSVANAHISRLSGSSNDINTLVLGGGGGGGATHTDTTVHLDDGGGGSSSKTRIGIAA
GAARSSGGNDISTGSSSAVGAGAGTAGGAGVGADSASRAGSASGAVGAGGASVGSAGTSG
STSGGGTSFSGGTGFGSGVSGGHMDAASLQMMVQHMLRAEMQSQSFRAVLLSSVQGERGL
PGPKGDNGYPGTPGPPGALGHAGPEGPKGQKGSQGDHGMEGTPGVRGREGLTGPRGEAGI
GLKGDRGAPGDTGSVGSAGPKGAPGLPGPAGEPGLQGFRGEAGAPGPKGDRGLAGFQGIK
GDTGDKGLRGMQGDPGIPGQPGSAGEKGSKGSTGVSGHDGAKGSRGDQGPAGPPGLRGPA
GSPGDAGIPGGPGLQGPPGIPGNPGQPGTKGETGQPGRIFNAAGSTSVGIPGPPGPAGPP
GSAGAPGLSGPIGPAGLPGQSGPKGDRGYKGDQGEPGVSVRMTEGHFSASGASRMSGQPG
PPGPPGPPGRPGDSRQGPPGPPGPAGQPGYGRPGPKGDKGDSGFGASSGTYYTGQPGPPG
PAGPKGSTGSPGPRGYQGEQGQQGVPGTPGSSERVSSYAGGHGIPGPPGPPGHPGRPGPP
GIKGDTGAPGASRGSISVTSGPPGPPGPPGPPGQTGSFSSSSEMRQYITDYLSRSRQDSI
PGPPGPPGPPGIPGTFSGSIEDISARIIVYLQRSGSGLSIGVQGPPGPPGPPGPGSGFQS
VSDLIVMLQRDDVRRYLSGPPGPQGPPGPPGSSGGLSGSYSIQEIATYVFTIMNDRGIAR
GPPGPPGLPGPPGTSNGAATGFSSVTIDYSALMKNSDFRSWISSAVQHGSPGPPGVPGSA
GPPGPQGPPGVSTATVLGAGSRGYSLEDIQRYLQGSGFRGQPGLPGPPGPQGPPGSYTGS
VSYSGNFPRESIRAEVQDYLTSDNVRRFITGTPGPPGPRGPKGERGEPGYTQGYVQSQSY
SQGDSRSSSDQREIIRKLTETLDYPSVALKVTDYIKNQGLLQQYMVEGPLKTNVRAIQGP
PGPPGPPGSPGYSRVIGSYGNVTADLMDFFRTYGTIPGPPGSPGPKGERGYPGPKGDKGD
PGHPGLAGLPGSYTIQIPHRVQKRDIGNKLLGRPRLHRPRG
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttgacgagacagatggacttctcaggagacttgtcaggagaaagggttgtt
acagaaactataaccaccacgactagactgacttccctgcctccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcactgctggagggctgggcttggagaagaatgtctta
acccagaacagcggtggaacgtatttctcctcatcctctgtaggtgtgaacactggctac
agctcctcctcaggagtgtacctcggtggagactcctcagggggaggcgatggagggggg
agctacatagatggagaggggtatggaagcggtggaggaggaggtggaggaggaggcgga
ggcagttatctcgtgagctcggtgtcaaaggtgaggtccagctcgtccagtggaggcagg
agggcgcaggcagggggctcatcaggaggcctgtcgccaggtttccgggagaggaagatc
ctatccagccgctcgggaggttatgacggaagttctagtgcaaattcctctccagaattt
actcgcaaagattatggaatctactgctccagcagcacaagagggaggagtgagagcaga
gagagcgagatcagagccagactacaaagtgcctctcccaccgcctgcagatggacggag
ctggatgacgtgaagaagctgctgaagggccgttcctgcagcgtcagccccacgcgctcg
tccagcgcctctaccaccctgcctgtccctaaaaaggccagcgcagaagccaagactgtc
tctgtggccacgcagtcggtttcaacttcattctctggctctggcgtgaggtcaggtgga
tttcacaccattgacgcgtcaggcctgtatgataccggtctggcgtctgggcagtttgat
aatggcgtcaagtccggccagtacgatgtcactctgatatcaggccaatatgacacgggt
gtgaaatcaggacagtttgatactggtgtgaaatcaggacagtatgatagtagtatgaag
tcaggacaatatgatatcggtctgaaatcagggcaatatgatactggtgtaaaatcaggc
cagtcctacaccagtatgcgatcaggccagtatgacaccagtttgagatcaggccagtac
gacgccagtttgagatcaggccagtatgacaccggtttgagaacaggtgagtatgacacg
ctggacgctgcacttccatctttctcctggtccaccgccacgctgccctcggcctccacc
acggtggtgcctggcaacaccggcagctacacgtaccaggtcagcaccaacaacaggtcg
gggggaatggcgccgctcagcaccacctcaccctcgtccctgtcagtttacggctttcag
aataatctggcgcccaccacaggcagtgtgctcaccaccagcggagccaacataagtggt
cacgtaggaggttatggggttcagaagaacgtgtcaactggaagtggtgtcgtcagctcc
gcagtctctacaaccactagatcccaaaccgaagatgcatacaagaataagttcttgatc
tctgacaaagagaacgttcaagccaggagggaaacagagacgctcattttggccaaagac
agcgggaagcagttcaccagcagcagcagcgttcacataggagggtccctatcaggagat
tcaataaagaaagagaagcttatctacagtgagacggccccactgaagtcagagacgggc
aactcttactatggatcatctggagttgtaatgaaagacaaagccacgtatgcagaaatt
cacagagacagcggcgtcttcggcggcggagggttctgctgctgctcggacgcatgttgc
tcctggtggaaatggctgctgggccttctcctcctctcccttctcctgctgggacttctg
tttggcctcattgcactggctgaggacgtgagaaagctgaagaatcgagtggctaacctg
gaggccgagtcctccgtcgctaatgcccatatcagtcgactttcgggctcttccaatgac
atcaacaccttagtgctcggtggaggtggaggtggaggtgccacacatactgacaccaca
gtacacctggacgatggaggtggaggctcaagctccaaaacacgaatcggaattgctgct
ggtgctgcccgctcctcagggggcaatgacatcagtactggaagtagctctgctgttggt
gctggtgctggtactgccggtggtgctggcgttggtgccgacagtgccagtagggctggt
agtgccagtggtgccgttggtgctggcggtgctagtgttggaagtgccggcaccagtggc
agcaccagcggtggtggcaccagtttcagtggtggcactggctttgggtccggtgtgagt
ggaggacacatggacgctgcctcacttcagatgatggtccagcacatgctcagagctgaa
atgcaatcacagtcattcagagctgtcctgctgtcctcagtgcagggagagagagggctt
cctggacctaaaggcgacaatggttaccctggaactccaggtcccccgggtgcactggga
catgcaggccctgaggggcctaaaggacagaaaggaagccaaggtgatcatgggatggag
ggaacaccaggtgtcaggggtcgtgagggcctgaccggccccagaggtgaagcaggcatt
ggactgaaaggtgacagaggtgctcctggagatactgggtctgtgggatcagccggaccg
aaaggtgcacctgggcttcctgggccagcaggtgaaccaggtcttcaaggtttccgtggc
gaggccggggcacctgggcctaaaggtgacagagggcttgctgggtttcaaggaatcaaa
ggtgacacgggtgacaaagggctcaggggtatgcaaggtgatcctggtataccaggtcag
cctgggtcagctggagagaaaggatccaaagggtcaacgggggtgtctggacatgatggt
gcaaaaggatcaagaggtgaccaaggaccagccgggcccccaggactcagaggtcctgct
ggttctcctggagatgctggaattccaggaggacctgggcttcaaggaccaccagggata
ccaggaaatccaggacaaccaggaacaaaaggtgaaactggtcaaccaggaagaatcttc
aatgcagctggttccacttctgttggcatcccaggaccacctgggcccgctgggcctccc
ggctctgcaggagctcctggattatcaggtcccattggccctgctggtctgcctggccag
tctggtcctaaaggtgacagggggtataagggagaccagggagaaccaggagtatccgtg
agaatgactgaaggtcattttagtgctagtggagcctcaagaatgtctgggcaacccggt
ccaccgggtcctcccgggccacctggacgtccaggagattcaagacaaggacctccagga
ccacccgggcccgcaggacagccaggttatggaagaccaggacccaagggagacaaagga
gactcaggctttggagctagctctggaacatattacactggacaaccaggaccacctggg
cctgctgggcctaaaggatcaacaggttctcctggaccaaggggctaccaaggtgaacaa
ggacaacaaggtgtgcccggcaccccaggaagctcagagagagtgtcgagttatgctgga
ggacatgggatccctggaccaccgggtccaccagggcatcctggacgtccaggaccacca
ggaatcaaaggggacactggagctccaggcgcctcaagaggttcaatctcagtcacttca
gggccccctggtcccccaggtcctcctggccctcctggccagacaggctccttctcttct
tctagtgagatgcgccagtacatcactgactatctaagtagaagcagacaggacagtatc
cctggaccaccaggtccacctgggcctcccggaatccctggaaccttctctggctctatt
gaggacatctctgctcgtatcattgtatatctgcaaaggtcgggctcaggcctcagcatc
ggtgttcagggtcctccaggaccacctggtcctcctggacctggctctggattccagtcg
gtcagcgatctcatcgtcatgcttcagagggacgatgtcaggagatatttgtcaggaccc
ccgggaccacaaggaccaccaggaccaccagggtcatcaggtggactttcaggcagttac
agtatacaagagatagccacatatgtcttcaccatcatgaacgacagaggcattgctcga
ggtccgcctgggccacctggtctacctggacctcctgggacttctaacggagcagccact
ggctttagtagcgttacgattgactattctgcactgatgaaaaattcagatttccgctct
tggatcagctctgctgtacaacatggttctcctggtcctccgggtgtcccaggtagcgct
gggcctcctggccctcaggggcctccaggagtgtccactgccactgtgttgggggcggga
agtcgtggctacagcttggaggacattcagcgttacctgcagggttctgggttcagaggt
caacccggccttcctggtcctccaggtcctcagggtccgccaggcagttacactggctca
gtctcctacagtggaaacttccctcgggagagcatccgcgctgaagtccaggattacctg
accagtgacaatgttcgccgtttcatcaccggaaccccggggcctccgggaccgaggggt
ccgaaaggagagcgcggagagccgggttacacccaaggctacgtgcagagccagagctac
tctcagggtgactcccgctccagctctgaccagagagagatcatcagaaagctcactgag
acactggactaccccagcgtcgctctgaaagttacagactacatcaagaatcaaggcctg
ttgcagcagtatatggtcgagggccctttgaagacgaatgtgagagcgattcaaggcccc
cctggtccacctggccctcccggatcacccggttacagccgcgtcatcgggtcctacggc
aacgtcacagctgacctcatggacttcttcagaacctatggcaccatccccggtcctcca
ggaagccctggaccaaagggagaaagagggtacccaggacccaaaggagacaagggtgat
cctggacacccaggtttggcaggattgccagggtcatacactatccagattccacacaga
gtgcagaagagggatataggcaataaattgcttggtcgtcctcgcctgcatcgcccccgt
ggctaa
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