Scophthalmus maximus (turbot): 118284528
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Entry
118284528 CDS
T09850
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118284528 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118284528 (prpf4)
Spliceosome [BR:
smau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118284528 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_IFT140_1st
Ge1_WD40
WD40_like
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
PSII_BNR
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
118284528
NCBI-ProteinID:
XP_035463188
UniProt:
A0A2U9CGC8
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All DBs
Position
20:99943..104364
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AA seq
510 aa
AA seq
DB search
MSDEEDAAPAVKRSRVFYGSLEEKERERLSSARHGGKGTGSDAVKAGIEAGNINISSGET
MEMEERVSERQHEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERAKRSQEECQQTWYHEGSAFLKDARLWLARYSLPRAFKR
LEAERAQRDVAEATRGIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATGSWS
GLCKLWSVPDCNLIRTLRGHNTNVGSVMFRPQAGVSLDQSDVSLASCAADGSVKLWNLES
DEPVADIEGHSERVSRVSWHPSGRFLGTSCYDNSWRLWDLEVQEEILHQEGHSKGVHDMT
FHPDGSLAATGGLDSFGRVWDLRTGRCIMFLEGHLKEIYSLHFSPNGHHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLVSAVRFQSTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggaggacgcggctccggccgtgaagaggagtcgtgttttctatggaagc
ctggaggagaaagagcgggaacgtctgagctcagcgaggcacggcggcaaggggacagga
agtgatgcggtgaaggcgggaatcgaggcgggaaacatcaacatctcgtcaggagagacg
atggagatggaggagcgggtcagcgagcgtcaacacgaagcgctcgctgagtttgagcgg
cggcggcgagcgcgtcagatcaccgtctccacggacgacgcagaggtgaaggcgggtctc
cgggcgctcggtgagccaatcacgttgttcggagagggaccagctgatcggcgagagagg
ttgagaagcgtcttgtcggtcgttggtcccgacgccctgaagaaatccaggaaagatgaa
gagcgagcaaagagatcacaggaagagtgccagcagacgtggtaccatgaaggctccgca
ttcctgaaggatgcccggctctggttggccagatactctcttccacgggcctttaagcgt
ctggaggcggaacgtgctcagagggatgttgctgaggcaacgagggggatccgacagcaa
gagctgcacaagagcctgaggaatctgaacaacttctgcagtcagatcggagatgatcga
ccaatcagcttctgccacttcagccccgactccaagatgttggccaccggctcctggagc
ggtctgtgtaagctgtggtccgtccccgactgcaacctgattcgtacactcagaggacac
aacaccaacgtgggttccgtcatgttccgcccacaggctggagtctctcttgaccaatcg
gatgtgagcttggcctcatgtgctgctgacgggtctgtgaagttatggaatctggagagc
gacgagccagtggcggacatcgagggtcacagcgagcgagtgtcccgggtgtcgtggcat
ccgtctggaaggttcctcggaacgagctgttatgataattcgtggcgtctgtgggatctg
gaggttcaggaggaaattctccaccaggaaggtcacagcaagggcgtccacgacatgacc
tttcaccccgacgggtcactggctgctactggaggcctggattcgttcggcagggtgtgg
gacctgaggactgggcgctgcattatgttcctggagggtcacctgaaggagatctacagc
ctgcacttctcccccaacgggcatcacttggcaacaggaagtggtgacaacacctgtaag
gtctgggagctgagaaacaggaagtgcctgtacacagtccccgcccaccagaacctggtg
tccgctgttcgcttccaatccacggacggtcacttcctgttgactggagcatacgacaac
acggcaaaggtctggagtcatcctggttggacgccactgaagacgctcgccggacacgag
gggaaggtgatgggcgtcgacgtgtcgcctgacggtaaactgatcgcaacatgttcctac
gaccgtaccttcaaactctggttgtctgagtga
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