Scophthalmus maximus (turbot): 118284650
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Entry
118284650 CDS
T09850
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118284650 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118284650 (smarcc1a)
03036 Chromosome and associated proteins [BR:
smau03036
]
118284650 (smarcc1a)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118284650 (smarcc1a)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118284650 (smarcc1a)
PBAF complex
118284650 (smarcc1a)
GBAF(ncBAF) complex
118284650 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
118284650
NCBI-ProteinID:
XP_035463426
LinkDB
All DBs
Position
10:20900112..20923905
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AA seq
1129 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGGAAVGRKKDGGPSTKFWESSETISQMETVRLWIGKH
YKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFQDFKAGGALCHIL
GSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQAS
KLKDVIKRHQGSITDDKSKATHHIYPSPSQQDEEEWLRPVTRKDKQVLVHWGLYPDSYDT
WVSASEVDGDVEDPPSADRPWKVHAKWVSDTDAFNEWMNEEDYEVDENKKPVSFRQKIFP
KEEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGSHWKRRGHRGEEE
DTEEDVTKDMDDSSAGASMEEGSVSKNASSKKDSENTPVKGGNVADLDDMEDDSVLSGGK
DDEDQGKSEINRLIDAGEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDS
ESRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQPMPNFADKGRDKAIDLQNFGL
RTDLYKKIPKGKAITSTREWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLESTESSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARNTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMDT
DTDSQQADKAESKDEAEKPSESAEKIDKTDATEKVKKERTEAPEREEDKEEGEEAKTIPA
DKDNEEAMETSSSDQEKEKEEKAPSEEGEDKGKKLEHDIGEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQAAAAAAAAAAAAAAAAQAPGSGPQPGTPQPGTHPGGPPPHH
GGPAPHHGAPQPHHGGPPSGYPPMGHHPMGPHHPGQTGPMGPGQPMPGRMMPGPPSAGPP
PGGMPPMMPPRHPGAPNGMYPGPAPPQPEAVPAAAVGPAAPPSGRVADN
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcgggcgggacgggctccggtggaccggccaccggcccg
gtcggcggcggcggagcggcggtgggacgcaagaaggacggcgggccgtccacgaagttc
tgggagagctcggagacgatatcccagatggagacggtgcggctgtggatcgggaagcac
tacaagaagtatgtccagaacgactccccctccagtaaatccttggcgggcttggttgtc
cagctgctgcagttccaggaggacgcgttcggacgcagggtcaacaatcctgctctcacc
aagctacctgccaagtgtttccaggatttcaaggcaggtggtgccctttgtcacatcctg
gggtcggtctacaagtttaagagcgagcagggctggcgtcgattcgacctgcagaatccc
tcccggatggacaggaacgtggaaatgttcttaaatgttgagaagaacttggtccagaac
aactgcctgactcgaccaactgtcttcctgtcgccggacattgagcagaaacaggccagt
aagctcaaggacgtcatcaaaaggcaccagggctccatcactgatgataagtcaaaggcc
acccaccacatttacccctcaccatcccaacaagacgaagaagagtggcttcgccctgtc
acaaggaaagacaagcaggtgttggtgcactggggtctctacccagacagctatgatacc
tgggtatcagccagcgaggtggatggtgacgtggaggatcctcccagcgctgacagaccc
tggaaggtccatgccaagtgggtttcagacacagacgccttcaacgagtggatgaatgaa
gaagactacgaggtagacgagaacaagaagccagtcagcttccgccagaagatcttcccc
aaggaggaggagtcttcccgtacacccgatcgcaaggagcgcaaagccaactccgccggc
aagaagaggaggcgctcgccctcgccgcccagtactcccgctgagtcccggaagaaggga
ggaaagaaggggaaccccgggtctcactggaagcgacggggccacagaggcgaagaggag
gacaccgaggaggacgtgaccaaggacatggacgactcatcggctggtgccagcatggag
gagggcagcgtgtccaaaaatgcaagttcaaagaaagacagcgaaaatactccagtgaaa
ggagggaatgtggccgacttggatgacatggaggacgactcagtgctctcaggtggaaag
gatgacgaggaccagggcaaatctgaaatcaaccggctgatagacgctggcgaggacaac
gtgactgaacagactcaccacatcatcatccccagctacgctgcttggttcgactacaac
tgcatccatgagatagagagaagagccttgcccgagttcttcaatggaaagaacaagtcc
aaaactccagagatatacctggcctaccgtaacttcatgatcgacacgtatcggctgaac
cctcaggagtatctcacctccacctcctgccgcaggaacttgaccggagatgtgtgcgcc
atcatgagggttcatgcgttcttggagcagtggggtttggtgaattaccaggtcgattcc
gagagccgcccattgccaatgggccccccacctacaccccacttcactgtgctggctgac
acgccctccggcctcatgcccttgaaccaccgacccccaccgattcctcctccacagccg
atgcccaacttcgcagacaaaggcagagacaaggccatcgacctgcagaactttggcctt
cgcaccgacctctacaagaaaatccccaagggtaaagccatcacctctaccagggaatgg
accgagcaggagactctactgctgcttgaggccctggagatgttcaaagatgactggaac
aaagtgtcggagcacgttggttcacgcacccaggacgagtgcatcctgcacttcctgcgg
cttccaatcgaggatccctacctagagagcacagagtcgtctctgggccctctggcctat
cagcccatacccttcagccagtctggaaaccccgtcatgagcacagtcgccttcctggcc
tctgtggtggaccccagagtggcatctgctgctgccagggcagccctagaggagttttcc
cgcgtgcgagaggaggtgccggccgagctagtggaggctcacgtgaagaaggtgcaggag
gcggccaggaacacagggaaggtggaccccgccttcggcctggagagcagtggcatcgct
ggcaccgcccccgaggagccagaaaagaccgaaaccacagagccagagaagatggacact
gacacagactcccaacaggcagataaggcggagtcgaaggacgaggcagaaaagcccagt
gagtctgcagaaaagatcgacaagacggacgccactgaaaaggtgaagaaggagcgaacc
gaagcgccggagcgcgaggaggacaaggaggaaggagaagaggccaagacaattccagca
gacaaggacaacgaggaggccatggagacgtcgtcctcggaccaggagaaggagaaggag
gagaaggcgccttcagaggagggagaggacaaggggaagaagctagagcatgacattgga
gagggaaacatcgccacggcggccgcagctgctctggcatctgctgccaccaaggccaag
cacttggcggcggtggaggagaggaagatcaagtccctggtcgctctgctggtggagacc
cagatgaagaagctggaaatcaagctgaggcacttcgaggagctggagaccatcatggac
cgggagaaagaggccttggagcttcagcggcagcagctgctcaccgagcggcaggcgttc
cacatggagcagctcaaatacgcagagatgaaggcgaggcagcagatggagcagcaagct
gccgccgccgcggctgcagccgcagccgccgcagctgcagctgcccaggcccccggatct
ggaccccaaccagggacccctcaaccgggcacacaccctggaggacccccgccacaccac
ggaggaccagcgccccatcacggagcaccgcaaccacaccacggagggccgccgtccggc
taccccccgatgggtcaccaccctatgggcccgcaccacccaggacagacgggaccgatg
ggaccgggccagccgatgcctggacgtatgatgcctggcccgccctctgcaggcccccct
ccgggcggcatgcctcccatgatgcccccgcgccaccctggtgctcccaacggaatgtac
cctggcccagcacctccacagcctgaagcggtgcccgctgctgctgtgggtcctgcagcg
cccccgagtggacgagtggctgacaactaa
DBGET
integrated database retrieval system
