Scophthalmus maximus (turbot): 118285058
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Entry
118285058 CDS
T09850
Symbol
tnca
Name
(RefSeq) tenascin isoform X8
KO
K06252
tenascin
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118285058 (tnca)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118285058 (tnca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118285058 (tnca)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118285058 (tnca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
EGF_Teneurin
Fibrinogen_C
EGF_Tenascin
EGF_2
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF
NDNF
NDNF_C
hEGF
Motif
Other DBs
NCBI-GeneID:
118285058
NCBI-ProteinID:
XP_035464267
LinkDB
All DBs
Position
20:14958180..14993736
Genome browser
AA seq
1723 aa
AA seq
DB search
MGTRGLLGCLVLTALLGLSNSGLVKKIVRHRRQTLVSPKKQNITLPAADGPVVFNHVYNI
NVPASALCSVNLDKPESTQLHPKDAPVSTGHHITEHTVDGENQIVFTHHINIPRQACGCP
DDLPGLKELMSRLEMLEGEVSALRDQCNGDRPCCSAQATVIGDVGTKPYCNGHGNYSADT
CGCVCESGWKGPNCSEPKCPGNCQDGGRCVDGKCECFKGFSGEDCTFKACLMDCGARGRC
VGGICICWEGFFGDDCSQTSCPDNCRGRGRCQDGDCVCDEPWTGSDCSELVCPKDCYEHG
RCVNGTCYCSEGYTGEDCTERTCPNNCQGNGFCVDGQCVCTAGYSGKDCSQLTCLNDCNG
RGTCFNGMCICDMGYQGEDCSQLACLNNCNSRGQCINGQCACDVGFQGDDCSELSCPSNC
LQRGRCVNGQCVCEEGLAGEDCSIRTCPSNCYGRGECVDGRCVCHVGFTGTDCSELSCPN
HCQNRGRCIDGQCVCDEGLTGEDCSQKACPNDCLARGNCIDGKCTCQEGYSGEDCSVLTC
PDNCNNRGRCVNGRCTCEGGYEGASCAVLSCLNNCQDKGRCVNGQCVCDEGYIGEDCLEV
SPPKDLTVGEVTANTVDLSWNNDMLVTEYLVTYAPTSPGGLLQEITVSGDETSATVKELE
PGVEYLISVYAILSNKRSVPVSARVATDLPQPEGVKFKSVRETSVEVMWDQLYIPFDGWE
IYFRNTKEENGKVVSVLPASQNKFFQSGLGPGQEYEVSINIIKNNTRGPQTTTTVSTKID
GPGQVEVKDVTDSSALVSWSQPVVPMDRVAIFYTPTSDPSDVGSAVISPPDKQYSIDVLM
PDTEYTVSLTSMRGNVTSDPVTTTFTTALDAPKHLRAVSQTDTSITLEWTNSQADVGGYR
VKYSPISGSAHGEDVFPRGPGDTTKATVTGLNPGTEYGIGVTAMKKERESLPATANAETD
IDPPRGFEAADSTETSLALKWQKPRAKVNGYRLVYVSGDGQVEEEEIPATATSHVLSSLT
PGMSYTLSLTSERGHKRSTPVTLSASTEEQKPKVVNLTISDITWDGFTASWSPTVGEFDS
FVIEVTNLENFAESQNLTLSGDAFSLGISGLNPNNSYLVGLYGMYQGSFLEPVYSEATTE
AEAEVEHLFVSDITADGFRLSWAADDDMFDRFLIKIRDSKRLAHPREYNVRGDERTKVLT
GLMSGTEYEIELYGVSFDQRSQPITGVAQTGLSTPRGLHFSEVTDSSAVVHWTTPPSPVD
NYRIAYLPFEGGSPMMVTVDGSVFEAVLPNMVPGKTYQVTVSAVKGLEESDPSTDIVTTA
LDRPQGLTVVNVTDTAALLLWQPSVATVDGYVITYSADSVSPVVEHVSGNTVEFEMGSLV
PGTHYTVGVLAMKEVQKSDSALTEFTTDVDPPRDLTAINIQTDSATLIWQPPQAAVTGYM
LTFSSADGVIREVVLSPTASSYSMAELSGSTQYSVRLQAIAGVQRSRHVATVFMTMGQLY
RWPRDCAQIFLNGETTSGLFTIYVGGEEGQPIQVYCDMTTDEGGWTVALRRQNGKLEFFR
NWKNYTAGFGNMNDEFWLGLSNLHKITTSGHYELRVDLRDKGESAYAQYDKFTIAEPRTR
YKIYIGAYSGTAGDSMTYHQGRPFSTFDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKY
GDSSHSKGINWFHWKGHEHSIEFAEMKFRPANFRNFENRKKRS
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgggtacaagaggccttcttggctgcctcgtcctgactgctctgctcggcttatcgaat
tctgggctcgtgaagaaaatcgtacgtcatcggcgacagactctggtatcccccaaaaaa
caaaacatcaccctccccgccgcagacggccctgtggttttcaaccacgtctacaacatc
aatgttcccgccagtgccctgtgctcggtgaacctggacaagccggagagcacgcagctc
catcccaaagatgcaccggtctcgacgggccatcacatcacggagcacaccgtggacggg
gagaaccagatcgtgttcacccaccacatcaatatacctcggcaggcctgcggctgccct
gacgacctgcccggcctgaaagaactcatgagccggctggagatgctcgagggagaagtt
tcagctctgagagatcagtgcaacggtgacaggccctgctgcagtgcacaggccacagtc
attggtgatgtgggaacaaaaccttactgcaacggtcatggaaactacagtgctgacacc
tgtggctgtgtatgtgagtctggctggaagggacccaactgctctgagcccaagtgtccc
gggaactgccaggacggtggccgctgcgtggacggaaagtgcgagtgcttcaagggcttc
tctggcgaagactgcacgttcaaggcctgcctgatggattgcggcgctcgcggccggtgt
gtgggcggcatttgcatctgctgggagggtttcttcggtgacgactgctctcagaccagt
tgccccgacaactgccgaggccgcggccgctgtcaagacggagactgcgtgtgtgatgaa
ccctggactggctcggattgctcggagcttgtctgtccaaaagactgttacgagcatggg
cgttgtgttaacggcacctgctactgtagtgaggggtacaccggggaggactgcacagaa
cgcacctgtcccaacaactgccagggtaatggtttctgtgttgatggccagtgtgtctgc
actgccggctacagtggaaaggactgctctcagctcacctgcctcaacgactgtaacggc
agagggacgtgcttcaacgggatgtgtatctgcgacatgggataccaaggtgaagactgc
agccagttagcgtgtctgaacaactgtaacagtagaggccagtgcataaatggacagtgt
gcatgcgatgttggtttccagggagatgactgctctgagctctcctgtcccagcaactgt
ctgcaaagagggcgctgtgttaatggccagtgtgtgtgtgaggaaggcctcgccggggag
gactgcagcatcaggacctgcccctcaaactgctacggccgcggcgagtgtgtcgacgga
cgttgcgtgtgtcatgtaggcttcaccggcacggactgcagtgagctgagctgcccaaac
cactgccaaaaccgcggccgctgcatcgatgggcagtgcgtctgtgacgaaggcctcacc
ggagaagactgcagtcagaaagcttgtcccaacgactgcctggctagaggtaactgtata
gatggaaagtgcacctgtcaggagggctactcaggagaggactgctctgtgctcacctgt
ccagataactgcaacaacagggggcgctgcgtcaacgggaggtgcacgtgtgagggtgga
tatgaaggagcgagctgtgcagtgctgagctgcctcaacaactgccaggacaaaggccgc
tgtgtgaatggtcagtgtgtctgtgatgagggatacatcggagaggactgcctcgaagtg
tctccaccaaaggaccttactgttggagaggtcaccgctaacacagtggacttgtcctgg
aacaacgacatgttggtgacggaataccttgtgacgtatgcgcccaccagtcccggtggt
ctcctccaggagatcaccgtgtctggagacgaaacgtctgccactgtcaaagagcttgaa
cctggcgttgagtatctgatcagtgtctatgccatcctgagcaacaagaggagtgtacct
gtcagcgcgagagtggccacagatctcccacagccagagggtgtaaaattcaaatctgtg
agagagacctcagtcgaggttatgtgggaccagctgtacatcccctttgatggctgggag
atctatttccgcaacacgaaagaagaaaatgggaaggtcgtgagcgtccttccagcctct
caaaacaagtttttccagtcaggccttggaccgggacaggagtatgaagtgtccatcaac
atcatcaagaataacaccagagggccccaaacaaccacaacggtctccaccaagatcgac
ggccctgggcaggtcgaggtgaaagacgtgacggactcctcggcactggtgagctggtct
cagccggttgttcctatggacagagtcgccattttctacacccccacctccgacccctcg
gatgtaggcagtgcagtgatttcccccccagacaagcagtacagcatcgatgttctgatg
ccagacaccgagtacacagtgtccctcacctccatgaggggaaacgtcaccagtgaccct
gtcacgaccacattcactacagcgctggatgcccccaagcacctgcgggccgtgtcccag
acggacaccagcatcactctggagtggacgaacagtcaggctgacgttggcggatatcga
gtcaaatacagcccgatttctggatcagctcatggtgaggacgtgttcccccgaggaccg
ggagacaccacgaaagctacagtcactgggctaaatccaggtacggagtatgggatcggt
gtgactgccatgaagaaagagagagagagccttccagctactgcaaatgcagaaactgac
atcgatcctcccagaggtttcgaggcagccgactccacagaaacctccctcgctttgaag
tggcagaagcctcgtgccaaggtcaatggctacaggctggtgtacgtctctggagatggg
caggttgaggaggaggagatcccagccaccgcaaccagccatgtcttgtccagcctgact
cctggaatgagctacactctcagtttgacttcagagaggggacacaagaggagcacaccc
gtcaccctgtctgcatccacagaggagcagaagcccaaggtggtgaacctcaccatctct
gacattacatgggacggcttcactgcctcctggagccccacggttggggaatttgacagc
tttgtcattgaggtaacaaacttggagaatttcgcagagagccagaacctcacactgtct
ggagacgcattcagtctgggcatctccgggctgaatcccaacaacagctacctggttggc
ctgtatgggatgtatcagggctccttccttgaacctgtgtacagtgaagccaccacagag
gccgaggcagaggtggagcatctctttgtctcggacatcactgccgatggcttccgtctg
tcatgggcggctgatgacgacatgtttgacagatttttgatcaaaataagagacagcaaa
agattagcccatcctcgagagtacaacgtccgcggtgacgaacgaaccaaggtcttaacc
ggactcatgagtggcaccgagtatgaaatcgagctttatggtgtctcattcgaccagcgc
tcccaacctattactggggtcgctcagacaggcctgagcacgccaagaggactccacttc
tccgaagtgactgactcttcagctgtagttcactggaccacgcctccctctccagtggat
aactaccgcatcgcctatttgcccttcgaaggaggaagcccaatgatggtgactgtggac
ggcagtgtgtttgaggctgtgctgcccaacatggtacctggcaagacgtatcaagtgact
gtcagtgctgtgaagggtctggaggagagtgaccccagcactgacattgtgaccacagct
ttggacagaccccagggtctgactgtggttaatgtcacggacaccgcagccctgctgcta
tggcaaccatctgtggccactgttgatggctacgtcattacctacagtgctgattcagtg
tcaccagtggtggagcatgtttctggaaacactgtggagttcgagatgggctccttggtt
ccaggaacccactacacagttggcgttcttgctatgaaagaagtgcagaagagcgactct
gctcttactgaattcaccacagatgtggaccctcctcgtgacctgacggctattaacatt
caaactgacagtgcaactctgatatggcagcctccgcaggctgcggtcaccggttacatg
ctcaccttctcctctgctgacggtgtaatcagggaggtggtgctcagccccacagcctcc
tcctacagcatggctgagctctctggctccacacagtacagtgtcagactgcaggccatc
gccggagtccagaggagtcgtcatgtagccaccgtcttcatgaccatgggacaattgtac
agatggcccagggactgtgctcagatatttctgaatggagagacgacctctggtctgttc
accatctatgtggggggagaggagggacagcccatccaggtttactgtgacatgaccaca
gacgaaggaggatggacggttgccctcagacgccagaatggaaagctggaattcttcagg
aactggaagaactacactgctggcttcggtaacatgaacgatgagttctggctcggtctc
tccaacctccataaaatcacaacttctggccattatgagctacgagtggacctgagggac
aagggggaatctgcctacgcccagtacgacaagttcacgattgcagaaccaagaacacgc
tataaaatctacataggagcctatagtggaacagcaggtgactccatgacctaccaccag
ggtcgacccttctccacttttgacaatgacaacgatatcgccgtcaccaactgcgccttg
tcctacaaaggcgccttttggtataaaaattgtcatcgcgttaacctcatggggaaatat
ggcgacagcagtcacagtaaggggatcaactggttccactggaagggccacgaacactcg
attgaatttgcagagatgaagtttagaccggccaacttcaggaactttgagaacagaaaa
aagcgatcatag
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