Scophthalmus maximus (turbot): 118285190
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Entry
118285190 CDS
T09850
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118285190 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118285190 (mtrex)
03041 Spliceosome [BR:
smau03041
]
118285190 (mtrex)
03009 Ribosome biogenesis [BR:
smau03009
]
118285190 (mtrex)
03016 Transfer RNA biogenesis [BR:
smau03016
]
118285190 (mtrex)
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118285190 (mtrex)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118285190 (mtrex)
Spliceosome [BR:
smau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118285190 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
118285190 (mtrex)
Ribosome biogenesis [BR:
smau03009
]
Eukaryotic type
Pre-60S particles
Helicases
118285190 (mtrex)
Transfer RNA biogenesis [BR:
smau03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118285190 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
118285190
NCBI-ProteinID:
XP_035464556
LinkDB
All DBs
Position
20:complement(12487835..12508319)
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGEGLFSVFDDEQQTATSKKLPASVTLETGKAAVKNGTEKDAGPSARVKREADSDG
GEEAVFGKRPKLETANDLSLADFMPQVKVEQVETVEGCSHEVALPSSDEYKQLKPRVGKA
AKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSAGGGKWDPRGRKG
GTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNREDEKRLVEEVFNN
AVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMK
KLEEQYHAIEIPNEEGVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFCKKSNVKTITDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEMQ
VVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKD
PTLKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQ
MDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQATA
LLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVIYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcgtttggagaaggcttgttcagcgtgtttgacgatgaacaacaaaccgcc
acgagcaaaaagctacccgcctccgtgaccttagagaccgggaaagctgcagttaaaaat
ggcaccgagaaggatgctggtccatctgctcgggtcaagagggaggcggacagcgacggc
ggagaggaggcggtgtttgggaagagacctaaactcgagacggccaacgacctgagtctt
gcagatttcatgccccaagtgaaggtggagcaagttgaaaccgtggaaggatgctcgcac
gaggtcgctctgccttccagcgatgaatacaaacaactcaaacctcgagtggggaaagcg
gccaaggagtaccctttcattcttgacccgttccagcgtgaggccatcttgtgtattgac
aacaatgagtctgtgcttgtgtctgcgcatacctctgctggcaagactgtgtgtgctgaa
tatgccatcgctctggccctccgagagaagcagagagtgatcttcaccagccccatcaag
gctctttccaaccagaaatacagagagatgtacgaagagttccaggacgtggggctgatg
actggtgacgtcaccatcaaccccactgcctcctgcctcatcatgacaacggagatcctg
aggagcatgctgtaccgaggctctgagatcatgagggaagtggcgtgggttgtctttgac
gagatccattacatgagagatgcagagcgcggtgtggtgtgggaggagaccatcatcctt
cttcccgacaacgtgcattacgtcttcttgtcagccaccatccccaatgccagacagttt
gccgagtggatttgtcaccttcataagcagccgtgccatgtggtgtacacagaataccgt
cccactccactgcagcattacatctttccagcagggggcgacggtctccacctggtggtc
gatgagaatggagacttcagagaggataacttcaacacagccatgcaggtgctgagagat
gcaggggattctgggggcagcgccggaggtggcaagtgggaccctaggggacgaaaagga
ggcactagaggtccatccagtgtgttcaagatagtgaagatgatcatggagaggaacttc
cagcctgtcatcattttcagcttcagcaagaaagagtgcgaggcctacgctctgcaggtg
gccaaactggactttaacagagaggatgagaaacgtctggtggaggaagtgttcaacaac
gcggtggactgtctttcagacgaagacaagaaactccctcaggtggagcatgtgctgccg
ctgctgaagagggggatcggtatccaccatggaggcctgctgcccatcctgaaagagacc
atcgagatccttttctccgaaggcctcatcaaggccctgtttgccacagagacgtttgcc
atggggatcaacatgccagctcgcaccgtgcttttcaccagcgcacgcaagtttgacggc
aagaaccatcgctttataacatcaggtgagtacatccagatgtctgggcgtgcggggagg
agaggaatggacgacaggggaattgtgattttcatggtggatgagaagatgagtccggct
gtgggcaaacagctgctcaagggatcagcagaccctctgaacagtgccttccacctgacc
tacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatgctggag
aagtccttctaccagttccaacactacagggctctgcccggcgtggtggagaaaatgaaa
aagttggaggagcagtaccacgccatcgagatcccgaacgaagagggcgtcgtcacttac
tttaaaatccgacagcagctggccaagctgggtaaagagatacaagagttcatccacaaa
cccaagtactgcctgcccttcctgcagccggggcgacttgtcaaggtaaagaatgaggac
gctgactttggctggggagttgttgtgaacttttgcaagaagtctaatgtgaagacaatc
acggactcggagccgctgtatgtggtggaggttttggtccactgcagtaaggacagtgtg
aaagacgctgccaccgaggcggctaaacccgctgctccaggggagactggagagatgcag
gttgtcccagtgatgctgcatctcctgacttccatcagctccgttcgtctttacatcccc
aaagacctgaggccctttgacaacagacagctcatgctcaagtcaatacaggaggtgcag
aagcgtttcccagacggagttcctctgctcgaccccgtagacgacatgggcatcaaagac
cccacactgaagaaagtcattcaaaaggtggaggccttcgagcaccgcatgtactcccac
cctctgcacagtgaccccaacctggaatctgtgtattcgctctgtgagaagaaagccctg
attgcagcagatgttcgtacggccaagcgggagctgaagaaagctcggaccgtcctgcag
atggacaagctcaagtgcaggaagagagttctgcgacgcctcggcttcgccagcccctcc
gacgtcatcgagatgaaggggcgggtcgcgtgtgaaatcagcagtgccgacgagctcctg
ctgacggagatggtgttcaacggactcttcaacgacctgacggccgagcaggccaccgcc
ctgctgtcttgcttcgtcttccaggagaacgccagcgagatgcctaaactgaccgaacaa
ctggctgcgcccctgagacagatgcaggagtgtgcgaagcgaatcgccaaggtgtcggca
gatgccaagctggaggtggacgaggagacgtacctgaaccagttcaagccgcacctgatg
gacgtgatctacgcctgggccaacggcgccactttcgctcaaatctgcaagatgaccgac
gtctttgaagggagcatcatccgctgcatgcgtcgtctggaggaggtcctgagacaaatg
tgctctgcagccaaggccataggaaacactgaactggagaacaagttcgcagaaggaata
acgaagatcaagagggacattgtctttgcagccagtctctacctataa
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integrated database retrieval system
