Scophthalmus maximus (turbot): 118285526
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Entry
118285526 CDS
T09850
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118285526 (taf1c)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
118285526 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
118285526
NCBI-ProteinID:
XP_035465121
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All DBs
Position
20:complement(1466767..1474387)
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AA seq
1057 aa
AA seq
DB search
MDYQFPPRLFPSFYSCGPPDAVPGNSAGAWGRYERVGLEAGSGPGSSWIFTSSHQVRGET
WRQTEPVPVPLLSPRNRFLWPVKPPDPLDFKEHMQNFFMDHCGDAFGCMGEILGENFNFA
QRRKPEHRRDSVNMGKVKNILDKLEYKICHKVHHSIPLNKYILLLSDVVHSVPPDLLGSL
LHEELTEQRDRMLFSEAATGGALTFVPFSPSGGTGCLVYPGSQGLNELNFHSVELQHHRG
GSSALTSSSDRFSFQLKGPIRQISSASLFNNCCVAVRSDHLCGIWSFSDGVEPRLLQVVD
TREVATCVSASPHVLGEVLVASESGAVNLWTVGKGMQKVREDNSNLFFNATSPWRWCEFS
AHPRVMVYADRTGAELTDMRMNPFSGHALFRISSTAECRRGERLILSRYLGDAHSFHHLV
TTHLSAYVVDERFPCVPMLKWDHMMQSAPLFCHVLPGSASSDSGAGGARSTKVVLGSHSS
QEITLLQYSGGRAEACFSRGPPQALLRPRDSLGHLPVQIPHRLDVATHRLSSAAAGLTCV
EQKGEGSDCLCVLQLTEAGDIFYQILEPEQPDDDKASSRLPAALDDEQTATSERRNAEHI
APYSLSVAEDTSSDNSMIGPTQHLSAPMFVAETPERERRAEVTSSDSDDWVPGRKRRILQ
SLGLRVVVNDDSEPDYASGSEEGAEDGTKGGAKADDAEKPCSVEERVRSSRSLAPIDSSE
PSLSTVTLVTWKRWLQKLMRKSRDKKLRPRRSQNITTTTKGLLRLPADRKRDSTEDELVR
SVRRDLRTCMSDRSLLLRGAVSSSLAALDPVPLPDTVDTDAWSDPLSRRLTLSWQGGEEV
WRAWWADEMGLNRAEKERALRRKRRREKEAKRATGRRLELSGSFTTSCSYQSDLDSICGP
IGWSSMASQETLSDAEGAGRRQWECGTTRAAYRPPVVLSDALVATPTATPVNDRRGDQRS
PSIKSLSQMVKPVITPANQRSRRLTQDALLALQDERSQLNVDPPEQLSFPTRNLGVGLSG
RAPLRASVSQWLSLSQGSQGRPGPASQAKKRKSRMGF
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggattatcagttcccgccgaggctctttccttccttctacagctgcgggccgccggac
gcggtcccggggaacagcgccggagcctggggccgctacgagcgggtcggactcgaggca
ggttctggtcctggctccagctggatcttcacctccagccatcaggtccgaggggagacg
tggcgtcagacggagcctgtgcctgttcccctcctgtcccccaggaaccgtttcctgtgg
cctgtgaagcctccagatccactggacttcaaagaacatatgcagaacttcttcatggat
cactgtggcgacgccttcggctgcatgggcgaaattctgggcgaaaacttcaactttgca
caaagaaggaaaccggaacatcggagggattccgtgaacatggggaaggtgaagaacatt
ctggacaagctggagtataaaatatgtcacaaggtgcatcactccatccccctgaacaaa
tacattctgctgctgtcggacgtggttcactcggttcctcccgacctgctgggttctctg
ctgcacgaggagctgacggagcagagggaccgcatgctcttctccgaggccgccacaggt
ggcgctctgaccttcgtgcccttctcaccgagcggcggcacgggctgcctcgtctacccc
ggaagccagggactgaacgagctcaacttccacagtgtggagctgcagcaccatagagga
ggttcctccgctctgaccagcagcagcgacaggttcagcttccagctgaaaggccccatc
agacagataagctccgcctccctcttcaacaactgctgcgttgccgtgcggtcggatcac
ctgtgcggcatttggagcttcagcgacggcgtcgaacctcgtctgctgcaggtggtcgac
accagggaggtcgcgacctgtgtcagcgccagtcctcacgtgttgggcgaagttctggtg
gcgagcgagagcggcgccgtgaacctgtggactgtcggcaaagggatgcagaaggttcgg
gaggacaacagcaacctgttcttcaacgccacatcgccgtggagatggtgcgaattctcc
gcccacccaagggtgatggtgtacgcggacaggacgggggcggagctcacggacatgagg
atgaatcccttcagcggtcacgccctgttccggatcagcagcaccgctgagtgtcggagg
ggagagcgactcatcctgtcccggtacctgggagacgcccactccttccaccacctcgtc
accactcatctctcggcctacgtcgtggacgagcggttcccctgcgtgcccatgctcaag
tgggatcacatgatgcagtcggcgccgctgttctgtcatgtcctgcccggctctgcctcc
tccgactcgggagcgggcggagccaggagcaccaaggtcgtgttgggctcacacagttct
caggaaatcaccctgctgcagtactcaggaggacgcgccgaggcctgtttcagccgcggt
cctcctcaggcgctgctccgacccagagacagtctgggtcacctccccgtccagatccct
caccgcctggacgtcgccacccacagactgtcctcagctgctgcaggtctgacgtgtgtt
gagcagaaaggagaaggatcggactgtctctgcgtcctccagctgacggaggccggagat
atcttctaccagatcctggagccggagcagccggacgacgacaaggcgtcgtctcgactt
cccgcggcactggacgacgaacaaaccgcgacgtcggagagacgaaatgcagaacacatc
gcgccgtattctctgtcggtcgccgaggacacgtcaagcgacaacagcatgatcgggccg
acccagcatttgtctgcgccgatgtttgtggccgagactccagagagggagcgacgtgcg
gaggtcaccagctctgactctgacgactgggtgccgggaaggaaacgtcgaatactgcag
agtttggggctgcgggttgtcgtcaacgacgattcggagccggattacgcgagcggatcg
gaggaaggagcggaagatggaacgaagggcggagctaaagctgatgatgcagagaaaccc
tgcagcgtggaggaaagggtccgcagctccaggagcttggctccgatcgattcctctgag
ccgtcgctcagtacagttactctcgtcacctggaaacgctggctccagaaactgatgcga
aagagtcgtgacaagaagctccgcccacgtcgctcgcagaacatcacgaccactactaaa
ggcctcctccggctcccggctgacaggaaaagagactcgacagaggacgagctcgtgcgg
agcgtgaggcgagatctgaggacgtgcatgtccgaccgctcgctgctgctccgtggcgcc
gtctcctcctcgctcgcggctctggatccggtcccgctgccggacacagtggacacggac
gcctggagtgatccgctcagccgccgcctcacgctctcctggcaaggaggggaggaggtg
tggcgggcgtggtgggcagacgagatggggctgaacagggcggagaaggagagggctctg
cggaggaagaggaggagggagaaggaggcgaagagggcgaccggccggcgcctggagctg
tcgggcagtttcaccacgtcttgcagctaccagtcggacctggacagcatctgtggcccg
atcggctggtcgtctatggcgagccaggagacgttgtctgacgcagagggggcggggcgg
cggcagtgggagtgcgggacgacaagggccgcgtatcggccccccgtcgtgctgtctgac
gccctggtcgccacgccgaccgccacacccgttaacgatagacgcggcgaccagcggagt
cccagcatcaagtctctgtcccagatggtgaaaccagtcatcacgccagccaatcagaga
agcagacgtctgacacaggacgctctgctcgccctacaggacgagcgctcgcagctcaac
gtcgaccccccggagcagctgagcttccccacgaggaacctgggggtgggtctgtccggc
agagcccccctgagggcgagcgtctcccagtggctgtccctctcccagggttcacagggc
cgaccgggaccggcgtcgcaggccaagaagaggaagtctcgcatgggattctga
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