Scophthalmus maximus (turbot): 118285695
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Entry
118285695 CDS
T09850
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smau03036
]
118285695 (dicer1)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118285695 (dicer1)
microRNA pathway
RISC loading complex
118285695 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118285695
NCBI-ProteinID:
XP_035465360
UniProt:
A0A8D3AY47
LinkDB
All DBs
Position
15:21553672..21586042
Genome browser
AA seq
1902 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYHGNAKRTVFLVNTVSSVVQQAAAVRTHSDLQVGEYTDMEKI
SAWTDQQWSQEIIKNQVLVMTCHVFLHVLRHKILLLSKINLVVFDDCHLAITDHPYCEIM
KLFEGSSCSPRILGLTASILNGKCDPSELEQKIQNLENILKSNAETATDLVVLDRYASQP
REVVLDCGPYVDKSGLSSHLLEELDDALHFLNDCNISAAREDRDPTFISKQVLGDCRAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPDLAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYVMLANSDRTKTFEEDLTTYKAIEKILRNKCSKSVEMSELEVEQVLDDDNI
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTLEVQDGRLQSTLYLP
INSPLRVPVKGPIMTCARLAEKAVALECCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRSFGILTAKPIPRIPYFPVYTRSGEVTISIELQKSGFTLTATQLDLITRLH
QYIFSHILRLEKPALEFKPTQADSAYCVLPLNVVGDSNTLDMDFKFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGAQTLPPDFR
YSNLDFGWKRSIDSKTFISCPESCSDDDDDHCEHQQTLAPDPSCPTPPSIPHSSLPEQRP
PAAPESGNTTCTRNLTNGTALVTDCNDSCHQDNCQCSQPSSPGQQSPESIKTSTSVPVQP
SHSLKKSSSCPPQPSGGCTPGRTSDHTNKATSVCSQVTTGPNVATAPSPDLGASPQHRDQ
TGNSSKCLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGR
LSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKNCTDKQDFEEK
EDLLANGEPGNDYDEEEDDEEEGEEVEEDGEVMLKVEPKDEVNMEDDLEYYKEHIKFIDN
MLLGSGAFAKKISLSVFPPSPAPASASTPAMESPNQWKAPKKPLQPTATHYPPEPASSGP
SAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEESCGVELGKQSISYDLHTEQCIAD
KSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGSLTGALVQSFQSSAIDLCYG
WLKIPPRCMLSHPDAERTLNHLISGFENFERKIHYTFQNKAYLLQAFTHASYHYNTITDC
YQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA
ISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIY
MDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRV
TVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNN
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggctggcttacaacttgtcacccctgctacttcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgataacatctacacacctaggaaatatcaggtagaa
cttctcgaagcagctcttgaacataatactattgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggacattatcat
ggaaacgcgaagaggacagttttcctggtgaacactgtttcatctgtagttcagcaagca
gccgcagtcaggacccactctgacctccaggtgggagagtacacagatatggagaaaatt
tcagcatggacggaccaacagtggagtcaagagataatcaagaatcaggtgctggtcatg
acttgccacgtattcctacatgttctgaggcacaagattttactgttgtcgaaaatcaac
ctggtggtttttgatgattgtcacctggccatcacagaccacccgtactgtgagataatg
aagctgtttgaaggcagttcgtgcagtcctcgcattctgggtctcacagcttctattctg
aatggaaaatgtgacccgtcagagctggagcagaagatccagaatctagagaacatcctg
aagagcaatgctgaaaccgctactgacctggtggtcctggacagatatgcctctcagcca
agagaagtggtgctggactgcggcccgtacgtggataagagtggtctttcctcacatctg
ctggaggagctggacgatgctctccacttcctgaatgactgtaacatatctgctgccaga
gaggaccgagatcctacattcatctccaaacaggtcctgggtgactgtcgggctgtgctg
caggtgctggggccctggtgtgcagataaggcagcgggtatcatggttcgggagctccag
aagtatatcaaacacgagcaggaagagctcagccgtaagttcctgctcttcactgacacc
atcctgcgcaaagtgcatgccctctgcgaggagcacttctcccctgcctcactggacctc
aagtttgtcacccctaaggtcctccggctgcttgagatcctgcacgagtacaagcccttt
gagcggcagcagtttgagagtgttgagtggtacaacaaccgcaaccaggacaactatgtg
tcctggagtgattcggaggatgaagatgaggacgaggaggtggaggccaaagagaggcct
gaagccaactttccctcacctttcacaaacatcctgtgcgggatcatctttgtggagaga
cgttacacagctgttgtcctcaatcgtcttatcaaagaggcgggaaagcaggacccagac
ctggcttacatcagcagcaacttcatcaccggccacagcatcggcaaaaaccagccacgg
aacaaacaaatggaggtggagttcaggaaacaagaggaggttctccgcaagttccgggcc
catgaaaccaacctccttattgccaccagcatcgtggaggaaggcgtggatattccaaag
tgtaacctggtggtgcgatttgacctgcccacagagtacaggtcctatgtccagtcaaaa
ggcagagctcgagctcccgtctccaactacgtcatgctggccaacagtgacaggaccaaa
accttcgaggaagatctcactacgtacaaggccatagagaagatcctgaggaacaagtgt
tccaagtcagtggagatgagtgagttagaagtggagcaggttctagatgatgacaacatc
cttccaccctacgtgctccgatctgaggatggaggtccccgggtcaccatcaacacagct
attggacacattaacaggtattgtgctcggcttcccagcgacccattcacccacttggca
cccaaatgtaaaactttggaggtgcaggatggacgcttacagtccacactctacttaccc
atcaactcccctctgcgagtccctgttaagggtccgataatgacttgtgcccgactggca
gagaaagctgttgcactagaatgctgtgagaaactccacaaaataggtgagctggacgat
cacctgatgccagtggggaaggagacggtcaaatacgaggaggagcttgatctccatgat
gaggaggagacaagtgtcccaggccggcctggttccaccaagaggaggcagtgctaccct
aaagccataccagagtgtctgagggacagttacgccgtaccagagcagacctactatctg
tatgtgattgggatggtcctcaccacccctctcccggatgaactcaacttccgcagaagg
aagctatacccaccggaggacaccaccaggtcctttggcattctcactgccaaacccata
cccagaatcccctacttcccggtatacactcgctcgggtgaggtgacgatctccatcgag
ctgcagaagtctggtttcacactcactgccacccagctcgacctcatcacccgccttcac
cagtacatcttttcccacatcctccgcctggagaaacctgcactggagttcaaacccaca
caggctgactcggcatactgcgttctacctctgaatgtcgtcggggactccaacacactc
gatatggactttaagttcatggaggacattgagaagtctgaggcccgcactggcattcct
accactcagtacaccaagcagaaccccttcactttcaagttggaggactaccaggatgcc
gtgatcattccaaggtatcgtaactttgaccagcctcatcgcttctatgtcgctgatgtg
tatacagacctgacgccgctcagcaagtttccgtcaccagagtatgagacttttgctgag
tactacaagaccaagtacaacctggacctgtccaacctaaaccagccgctcctggacgta
gaccatacttcctccagactgaacctgttgacccctcggcacctgaaccagaaggggaaa
gccctgccgctcagcagtgcagagaagaggaaggccaagtgggaaagtcttcagaataaa
cagatcctggttccagaactgtgtgcaatccaccccatccctgcttccctgtggaggaaa
gcagtgtgtctgcccagcatcctctaccgcctccactgcctcctgaccgctgaggagctc
agagcccagactgccagtgaagctggagtgggagcccagaccctcccccctgacttcagg
tattcaaacctggactttggctggaagagatccattgacagcaaaacattcatttcctgt
cccgagtcctgcagtgacgatgacgatgatcactgtgagcaccaacagactttagccccc
gaccccagttgcccaacaccacccagcattccccactcttctctgcctgagcagcggccc
cctgcagcccccgagtctggaaacaccacctgcactaggaacctaacaaatgggactgcc
cttgtcacagactgcaatgacagctgccaccaagacaattgccaatgctcccagcccagc
tcgcctgggcagcagagccctgaatcaataaaaacctctacctcagtcccagtgcagccc
tcacacagcttgaagaagtccagctcctgtcctccacagcccagtggaggatgtacacct
gggaggacttcggaccacacaaataaagctacctcagtctgcagccaggtaaccacggga
cccaacgttgccacagcaccttctcctgaccttggcgcttccccccagcacagagaccag
acagggaactcctccaaatgtctggggcccaacccgggccttatcctgcaggccttgacc
ctatccaacgcaagtgacggcttcaacctggagcggctggagatgctgggcgactctttc
cttaagcatgccatcaccacatacctgttctgtacttatcctgacgctcacgaaggaaga
ctcagttatatgcgcagcaagaaggtgagcaactgtaacctctatcgtcttgggaagaag
aagggcctccccagcaggatggtggtgtccatctttgacccccctgttaattggctgcct
cccggctacgtggtcaaccaggacaaaaactgcactgacaaacaggatttcgaggaaaaa
gaagatctcctggccaatggggaacctgggaatgactatgatgaagaagaagatgatgag
gaagagggtgaggaggtggaggaggacggtgaggtgatgctgaaggtggagccaaaggat
gaggtcaacatggaggacgatttggaatactacaaggagcacattaagtttattgacaac
atgttgttggggtctggtgcattcgcaaagaagatctctctgagtgttttccctccctct
cccgccccggcctctgcttccacacctgccatggagtcacctaatcaatggaaggccccc
aagaagcccctccaacccaccgcgacccactatcccccagagccggcatccagtggaccc
tcagccgaagagtttgactacagctcgtgggatgccatgtgctacctggaccccagcaag
gccggggaggaggacgactttgttgtcggtttttggaatccgtcggaggagagctgcgga
gttgagctcggcaagcagtcaatctcctacgacctgcacactgagcagtgcatcgcagac
aagagcatcgccgactgtgtggaggccctgctcggctgctacctcaccagctgtggagag
agagccgcccagatgttcctctgctccttgggcctcaaggtgttgccgttggagagaggg
agcctaacaggagctctggtgcagagcttccagtcgtcagcaattgacctgtgctatggc
tggttaaagatcccacctcgctgcatgctgagccatccagacgcggagcgaactctcaac
cacctcatttccggcttcgagaactttgaaaggaagatccactacacctttcagaacaag
gcatacctcttgcaagccttcacccacgcttcttaccattacaacaccattacagattgt
taccagcggctagagttccttggtgatgcaattctagactacctcataacaaagcacctt
tacgaagacccgcggcagcactcccccggtgtgctgaccgacctgcgctctgcacttgtc
aacaataccatctttgcctcgcttgctgtcaagtacgactaccacaagtacttcaaggcc
atctcacccgagcttttccatgtcatcgatgactttgtgcagtttcaactggagaagaat
gagatgcaaggcatggactctgagctgcgacgctctgaggaggacgaggagaaggaggag
gatatcgaggtccctaaggccatgggggatatctttgagtcgctagcaggggcaatttac
atggacagcaggatgtcattggagacggtgtggcaagtgtattatccaatgatgaggcca
cttatagagaaattctctgccaatgttccacgttctcctgtgagggagctgctggagatg
gaaccagaaactgccaagttcagtcctgcagagagaacgtacgacggaaaggtgcgggta
acggtggaggtcgttggtaagggcaagtttaaaggagttggccgcagctaccggatcgcc
aagtcggcggcggcacgacgagctctgcgcagcctcaaagccaatcaacctcaggtcccg
aacaactga
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integrated database retrieval system
