Scophthalmus maximus (turbot): 118285727
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Entry
118285727 CDS
T09850
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118285727
03041 Spliceosome [BR:
smau03041
]
118285727
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
118285727
Spliceosome [BR:
smau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118285727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118285727
NCBI-ProteinID:
XP_035465394
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All DBs
Position
15:6553905..6568379
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AA seq
577 aa
AA seq
DB search
MDGRLDADLYPLGSGYVPEIDSVHDISVGTKRGSDELFSSCISNGPYIMNSANGNDSKKF
KGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLELISEECA
QTMVSYYSSATPVIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGVGPM
AIPTDVASMGGAVGQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQAL
IQYGDGMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADS
QAALDHQAMAAAFGSQGIISASPYGGAHAFPPTFAIQQAGLSMPGIPGALASLGMGHGGM
AAAAAAAASRLGLSGLTATGGHNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKK
ENALIQMSDGTQAQLAMSHLNGQRLHGRAMRATLSKHTTVQLPREGHEEQGLTKDYSNSP
LHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEEDLRRLFASSGATVKAFKFFQKDRKMA
LIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacgctgacttgtatcctctgggatccggctacgtccctgaaatt
gacagtgtccatgacatatcagttggcacaaagaggggatccgacgaactcttttcttcc
tgcatatccaacgggccctatatcatgaactcagccaatggcaacgacagcaaaaaattc
aaaggtgacgtccgcagtcctggtgtcccgtcacgtgttgtccacgtacgcaagcttccc
aacgacataaacgaggctgaggttatcagcctggggttgccctttgggaaggtcaccaat
ctgctgatgctgaaggggaaaaaccaggcattcttggaactgattagtgaagagtgtgca
cagacgatggtgagctactactcctctgccactcccgtcatcagaaaccaccccatttac
atgcaatactcaacccacaaggagctcaagacggacaactctcccaatcaagtgcgtgcg
caggccgctctgcaggcagtcaatgcactgcacggaggtgggatgggagtgggacccatg
gccatccccacagatgtagctagcatgggaggagctgtgggtcagagccctgtactcaga
gtcatcgttgaaaatctcttctatcccgtcaccctggatgtgctacaccagattttctcc
aaattcggcactgtgctgaagatcatcactttcaccaagaacaaccagtttcaggctctg
atccagtacggcgatggcatgacagctcagcacgctaaactgtctctggatggacagaac
atctacaacgcctgctgtaccttgagaattagcttctccaaactcaccagcctgaatgtc
aagtacaacaacgacaagagcagggactacacccgaccagacctcccaactgcggattca
caggccgctcttgatcaccaggccatggccgctgcatttggttcacaaggcataatctca
gcctctccctatggtggagcacatgccttccccccaacctttgccatccagcaggcaggc
ttgtcgatgccaggtattcccggtgctctggcatccctgggtatgggccacggtggcatg
gcggctgcagcagcagcagctgccagccggctcggcctatcagggctcactgcaactggg
ggacacaatgtcttgctggtcagcaatctgaacccagagagcgttacgccacactgcctc
tttattcttttcggtgtgtatggcgatgtgatgagggtgaagatcctcttcaataaaaag
gagaatgctctgatccagatgtctgatggcacacaggcccagctagccatgagccacctg
aacggccagcggctccacggcagggcaatgcgtgcgacgctgtcaaaacacaccacagtg
cagctgcccagggaaggccacgaggagcagggcctcacaaaggactacagcaactcaccg
ctgcaccgcttcaagaagcccggctccaaaaattactccaacatcttcccgccctccgcc
acactccacctctccaacataccgccatctgtggtggaggaggacctcaggaggctgttt
gccagctcaggagccacagtcaaggccttcaagttctttcaaaaagaccgcaagatggcc
ctgatccagatgggctcagtcgaggaggcgatcgagtccctcattgagttccacaaccac
gatctcggggagaaccaccacctcagagtgtccttctccaagtccaccatctga
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