Scophthalmus maximus (turbot): 118285732
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Entry
118285732 CDS
T09850
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118285732 (scaf8)
03041 Spliceosome [BR:
smau03041
]
118285732 (scaf8)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118285732 (scaf8)
Spliceosome [BR:
smau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118285732 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118285732
NCBI-ProteinID:
XP_035465402
LinkDB
All DBs
Position
15:complement(14757969..14782827)
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AA seq
1448 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVVDSIVRQSRHQFGMEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSVTPVMPSSATAVNNTTPGTPATPATPANLVQGLPDWAS
QINNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDTSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHHQKAMSLEGQDSMFGQENSVATAQSISQPQLAEPE
NKIDDSIDNQQQDMDLDEGPDGMEEESFEAEEKKAVSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWE
AAKNAEPAKEVASPPLSAETTAVSNTQTEAYSQQVTMMSVQLPVAQAVPSAVSMVPPNFP
VTMGIPPPGYGPPPPFLRASFNASQPPPGFLQAAQAAGMASATSSLVQPPVATGQEAVKD
SPFSAMIPPTSTMPGSFLPSAIPGAGIFNPMGVQTQQAANDKTAQSAEGLDAAAELTLQG
MQNAVRSGMGLLGMHPSAALTHPLHQSGLAGQRMPGLLPLDVRPNLLQPGAAARFPLLMQ
HGPAQQAAGLLDSALQAHARARAPFAQLDPFIRAPNLTNENVSKAEDESSSGADEGKDQD
YRFPPMEKPSTGLLRTPPLEHREPPGSGAAGGGGGAGRPPLLQTPGTQPARTSLVGRLQA
LAGFTPDSRWNQARGDFDERDGMRGGPQAPGVPKGYQEERPTPGQNFPNRFDSRPGTAGG
AGVPANAGAAGGAGAAGVAGAAGGPQTWNRSSGAPAPFDSEQHQDLDERRRPWDRQRDRD
ERDFDFRRELNGNRHSRERERERERERERERDRERGRERSREFERDRDRDKERDRERDRE
RERERGGWTPLLPTPLLPTPSLNPNLTLNQGKLLSPLKLNPQIQQRFQSPLLPQAQAKPP
LMGLNQPLPQVQIKTPARSQSQATTPEPQSETPALSETPPAQSPPSAQSPDPSPDDKGQS
PLTEAPTQAESSPCSESPPQSESQHQPTAQSPSKTTASPDTESPNQASPLVELSPQDSPV
AFTPAASPTEETAHSLEEQDSPQKNEEEEEEEEEEEEEEEEEEESQERSFSSTPQWVNGS
VMDNISGAEPTPEGSPEPSPDPPSDSVLPDSEPEQLASPKDVDNEQSEPMEEAASQPVVD
TVTDTEGT
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtcaaagccttcaacaacgagctgtactcgctcaacgagtacaagccgccc
atctccaaggccaagatgacccagatcaccaagtccggaatcaaagctattaaattctac
aagcatgttgtccagagtgtagaaaagttcatacaaaagtgcaaaccagaatacaaggtt
ccgggcctgtatgtcgtcgactcgattgtcaggcagtcacgacaccagtttggcatggag
aaggatgtttttgcgccgcgcttcagcaagaacatcattgctacgttccagcacctctac
cgctgcccttcagatgataagagcaaaattgtgcgagtcctcaacctgtggcaaaagaat
gctgtcttcaagagtgacatcatccaacctctgttggacatggcagcagggatagccccc
ccaagtgtcacccctgtcatgccgagcagcgccaccgcggtcaataacactacacctggt
accccagcgaccccggcgaccccggccaatttagtccagggtctgcccgactgggcttcc
cagattaataacacagacactgtggctgccgtggctcagatcctacagagtccccaggga
caacagctgcagcagctggtacagagtctgcagatgcagcagcagaagccccagccctcc
ctgctgcaggccttggacgctggcctagtggtgcaattgcaggctcttacggcacaactc
actgcggctgctactgccaacagcctcaaccccctggagcagagagtctcttcctttaac
aaaaaacttttgggtccgtttgactttgggaatgattctgaacgtggcgaagaatctaaa
aaggacacgtcatcatcacaactgcccatggtgtcagagcccatcaacagctccctcttc
caccagttagccgagcagcttcaacagcagaacctggagcagtttcaaaagcagctgtta
gagcatcagcagcaccaccagaaggccatgagcttagaagggcaggattcaatgtttggg
caggagaactctgtagcgacggctcagagcatcagccagcctcagcttgctgagccagag
aacaagattgacgactccatagacaaccaacagcaggacatggatctggatgaaggccca
gatggaatggaggaggagagctttgaggcagaggaaaagaaggctgttagcacacgctcc
agaacacgctcaaggtcacgctctaggtccccgaagaggaggcggtctaggtcccgctct
ggctcacggaaacgcaagcaccgcaaacgctcgcgttcacgctccagagatcgcaaaagg
aagacttcacggtcttactcaagcgaaaggcgggcccgagagcgagagaaggagcggcag
aagaaagggctgcctcccataagatccaagactctgagtgtgtgcagcacaactctgtgg
gtgggccaggtggacaaaaaggccactcagcaagacctcaccaatctgtttgaagaattt
ggccagattgagtctataaatatgatccctcccagaggctgtgcctacatctgtatggtc
cacagacaagatgcgtaccgtgcccgccagaagctcagcaccggctcctttaagatcggt
tccaagatcatcaagattgcgtgggctctgaacaaaggggtaaagcaggagtacaagcag
ttttgggacgtggacctgggtgtcacctacattccctgggagaaggtgaagctggacgac
ctggatgacttcgctgaaggaggaatcattgaccaagagactgtcaatgacgagtgggaa
gcagccaagaatgctgagccagcaaaggaagttgctagtccgccgttaagcgcagagact
acagcggtatcgaacacccagactgaggcctacagccagcaggttaccatgatgtctgta
cagctaccagttgcccaggctgttcccagtgcagtcagtatggtgccccccaacttcccc
gtcaccatgggtataccccctccgggctacgggccaccaccacccttcctgagagccagt
ttcaacgcctctcagcctccgccaggttttctgcaggcagcacaggcagcaggcatggcc
tcagcaacttcttccctagtgcagccgcctgtggctaccggccaagaagctgtcaaggac
tcaccattcagtgctatgatccctccaaccagcaccatgcctggcagcttcctgccctca
gccatccctggagctggtatattcaacccaatgggagtccaaactcaacaagctgccaat
gacaaaacggctcagtctgcagagggattggatgctgctgcagagctaacgctccaaggc
atgcaaaatgcagtccgcagtgggatgggtctccttggcatgcacccttcggctgctctc
acccacccactgcatcagtctggtctggctgggcagagaatgccaggcctattgcctcta
gatgtgcgaccaaacctcctccagcctggggctgcagcccgcttcccactactcatgcag
catggccctgcccagcaggccgctggcctcctcgacagtgctctccaggcccacgctcgt
gccagggccccctttgctcagctggacccctttatcagggccccaaatcttaccaatgaa
aatgtatcaaaggcggaagacgagtcttcctctggtgctgatgagggcaaagaccaggac
tatcgcttccccccaatggaaaagccaagcacaggcctgctgaggacccctccactagag
catagggagcctcctggcagtggagctgcaggaggagggggaggagcaggcaggcctccc
ttgctccagaccccagggactcagccagccagaaccagcctagtgggacgtctgcaggct
ctcgcaggcttcactcctgatagccgctggaatcaggccagaggggactttgatgaacga
gatggcatgagaggaggtccacaggctcctggtgttccaaaaggataccaggaggagcgc
cccacacctgggcagaacttccccaaccgctttgacagccgtcctgggacggcaggagga
gctggggttcctgcaaatgctggagctgctggaggtgctggagctgctggagttgctgga
gccgctggagggccacagacctggaaccgaagtagtggagccccagcgccttttgacagt
gaacaacatcaagacctagatgagcgaaggcgtccatgggacaggcagagagacagagat
gaaagagattttgacttcaggagggagctgaacggtaaccgtcacagccgcgagagagag
cgtgagagggagcgcgagagggagagggagcgcgacagggagcgtggccgtgagcgcagc
agggagttcgaacgtgacagagaccgtgacaaagagagagaccgcgagagggatcgagaa
cgtgagcgtgaacgtgggggctggacaccccttcttcctacacctctgcttccaactccc
tctcttaatcctaacttgaccttaaaccaaggaaagctgctgtcaccactcaaattgaac
ccccagattcagcaacgattccagtccccactcctgcctcaagctcaggccaaaccccct
ctgatgggtctgaaccagccactccctcaggttcagatcaagactccagcccggtctcag
agccaggcaactacgccagagccccagtcagaaaccccagctttgtctgagacacctccg
gcgcagtcgccaccctctgcccaatcacctgacccatcacctgacgacaagggtcagagc
ccgttgactgaggctcccacccaggccgagtcatcgccatgttccgagtcccctcctcaa
tcagaatcccaacaccagcccacagcccagtccccctctaagaccactgcttctccggac
accgagagcccaaaccaagcctcgcctttggtcgagttgtcaccccaggactcgcctgtg
gccttcacaccagctgccagtcccactgaagagacggcacactctctggaggagcaggat
agcccacagaagaatgaggaggaggaggaggaggaggaggaagaagaggaggaggaggag
gaggaggaggagtcacaagagagatccttctcaagcacgccccagtgggtcaatggatct
gtgatggacaatatcagtggggctgagcccacacccgagggctctcctgagccaagtcct
gacccgccctccgactctgtgctccccgacagtgaacctgagcagcttgcctctcctaag
gacgtagacaatgaacagagtgagcccatggaggaagctgcgagtcagccagtggtagac
actgtcacagacactgaggggacataa
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