KEGG   Scophthalmus maximus (turbot): 118286006
Entry
118286006         CDS       T09850                                 
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
smau  Scophthalmus maximus (turbot)
Pathway
smau03082  ATP-dependent chromatin remodeling
smau03083  Polycomb repressive complex
smau04110  Cell cycle
smau04330  Notch signaling pathway
smau04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:smau00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    118286006
   03083 Polycomb repressive complex
    118286006
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    118286006
   04350 TGF-beta signaling pathway
    118286006
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    118286006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:smau03036]
    118286006
Enzymes [BR:smau01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     118286006
Chromosome and associated proteins [BR:smau03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     118286006
   HDAC complexes
    Sin3A-HDAC complex
     118286006
    BRAF-HDAC complex
     118286006
    REST complex
     118286006
    SHIP complex
     118286006
    MiDAC complex
     118286006
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     118286006
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    118286006
  Chromatin remodeling factors
   NuRD complex
    118286006
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 118286006
NCBI-ProteinID: XP_035465959
LinkDB
Position
15:complement(15324360..15329178)
AA seq 490 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKAKRTKTEGEKEGEEKEKKGEEETKEVKAEEKVPEEEKMDT
SKPKEESKTP
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcgctcacttcccaaggaacaaagaaaaaagtttgctactactacgacggtgatgtt
ggcaattattactatggccaggggcaccccatgaagccccaccgcatccgcatgacacac
aacctgttgctcaactatggcctctacagaaagatggagatatatcgtccgcacaaagcc
agcggagaggagatgaccaagtaccacagcgacgactacatcaaattcctgcgctcaatc
cgaccagacaacatgtcggagtacagcaaacaaatgcagagatttaacgtgggggaggac
tgtccggtgtttgacggtctatttgagttctgccagctctccggggggggctctgttgcc
ggtgcagtgaagttgaacaaacagcagacagacatcgccatcaactgggctgggggcctg
catcacgccaagaagtctgaggcctctgggttttgctacgtcaacgacatcgtcctggct
attctggaattactgaagtaccaccagagagttctgtacatagatattgacatccaccat
ggcgacggtgtggaggaggccttctacaccacagatcgtgttatgaccgtttccttccac
aagtatggagagtacttccctggcacaggcgatctgagggacatcggtgctggaaagggg
aaatattacgctgtgaattatccactgagagatgggattgatgatgagtcatatgaagcc
attttcaaacctatcatggccaaggtgatggagatgtaccagcccagcgcagtggttctg
cagtgtggagccgattctttgtcaggagacaggctcggctgcttcaacctgaccatcaaa
ggtcatgccaagtgtgtggagtacatgaagagcttcaacctgcctctgttgatgctgggt
ggaggaggctacaccatccgtaacgtagcacgctgctggacatacgaaactgccgtagcc
ctcgattcctccatcccaaatgagctcccatacaacgattactttgagtactttgggccg
gacttcaagctgcacatcagcccgtccaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcggctgtttgagaacttgcggatgctgcctcacgccccgggagtt
cagatgcaggccatccctgaggatgctgtgcaggaggacagcggagacgaggaggaagac
gaccccaacaaacgcatctccatccgtgctcatgacaagaggatagcatgtgaagaggag
ttctctgactccgaggacgaaggtgaaggtggacgcagaaatgcagccagcttcaagaag
gccaagcgaaccaaaaccgaaggagagaaggagggagaagaaaaggagaagaaaggtgag
gaggaaacaaaagaagtcaaagccgaggagaaggtgccggaggaggagaaaatggacaca
tcaaagccaaaagaggaatcgaagacaccttga

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