Scophthalmus maximus (turbot): 118286010
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Entry
118286010 CDS
T09850
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04137
Mitophagy - animal
smau04140
Autophagy - animal
smau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118286010 (hif1aa)
04137 Mitophagy - animal
118286010 (hif1aa)
04148 Efferocytosis
118286010 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118286010 (hif1aa)
Transcription factors [BR:
smau03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
118286010 (hif1aa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
118286010
NCBI-ProteinID:
XP_035465966
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Position
15:complement(11205495..11218418)
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AA seq
761 aa
AA seq
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MDTGVVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LTISYLRMRNLLTTDDPPAEEETELDIQLNSSYLKALDGFLMVLSEDGDIIYLSENVNKC
LGLAQFDLTGQSVFEFTHPCDQEELREMLIHRTGSKKTKDPNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVYETHTEQTTTGHKEPPVPYMVLICDPIQHPSNIEVPLDAK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHSLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLVLSLEQTDDV
KPVKEEPREEVKAVVESSPLDSPILLKEVEEKAPELDVIKLFTQKVEARPLASLYDQLKE
EPEALTLLAPAAGDTIISLDFSCPDSEIQLLKEVPLYNDVMLPSSSEKLALPLSPLPPSE
PLHVTTTTTDDSKAESYAPAPSTSITSHSSSETDSQLDFCLPMDSEMSSDFKLDLVEKLF
AIDTEPKTPFTTQAMEDLDLEMLAPYIPMDDDFQLRSLTPDEPLTCVQVKSLKSSPLQVT
QDVNSYPSSPFSSPGSSTASPAPLEPVNAPHPATIIAKRTPQLDKEVSLRTLAAQNAQRK
RKLGEIKEIIGQGYLLEEQLEQGKKLKASKSGTTTATTTTTILLLPSDLASRLLGSTSEG
TSSLFTLPQLTRYDCEVNAPLQGRQYLLQGEELLRALDHIN
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggagtcgtacccgaaaagaaaagagtgagctcggagcggaggaaggagaag
tcgagggatgcagcgcgatgccggcgtgggaaggagtcggaggtgttctacgagctggcc
cagcagctgcccctgccccacagcgtcagctccagcctggacaaggcctccatcatgagg
ctgaccatcagctatctgcgcatgaggaatcttctcaccactgatgaccccccggcagaa
gaggagacagagctggatattcagctaaacagctcctaccttaaggctctggatggtttc
ctcatggtgctgtctgaagatggagatataatttatctctctgagaatgtcaacaaatgc
ttggggctggcacagtttgacctgactggacaaagcgtctttgaatttacacacccctgt
gaccaggaggagctgcgggagatgctcatccacagaacaggctccaaaaagaccaaggat
ccaaacacagagcgcagcttcttcctccgaatgaaatgcactctgacgagccggggccgc
actgtcaacgtcaagtccgctacatggaaggttctccactgctcaggtcacgttcgtgtt
tatgaaacccacactgaacagactactaccgggcacaaggagccccctgtcccctacatg
gttctgatctgtgaccccatacagcacccctccaacattgaggtccctctggacgccaag
acctttctcagccgccacacgatggacatgaagttcacttattgtgacgagaggatcact
gagctaatgggttatgatccagaggatctgttgaatcgctccgtgtacgagtactatcat
gctctggactctgaccatctcacgaagactcaccatagcttgtttgcgaagggacaggtc
agcacaggacagtaccggatgttggccaagagaggaggctttgtgtgggtggaaacccaa
gccacggtcatctacaacaacaagaactcccaaccacagtgtgttgtctgtgtcaacttt
gtgctcagtggcatccaggaggagaaacttgtcctgtctttggagcagaccgatgatgtg
aagccagtgaaggaggagccgcgggaagaagtaaaggccgtggtggagagcagccccctt
gactctccaatcctgctgaaggaggtggaggagaaagccccagagctggacgtgatcaaa
ctgttcactcaaaaggtagaggcccggccgctggcaagcctgtacgaccagctgaaggaa
gaacctgaggccctcaccctgctggccccggccgcaggagacaccatcatctccctggac
ttcagctgccctgattcagagatccagctgctgaaggaggtccctctgtacaatgatgta
atgcttccctcctccagtgagaagctggctctgcctctctcccccctgccacccagcgag
cccctccacgtcaccaccaccaccactgacgattcaaaagctgagagctatgccccggct
ccgtccacttcaataaccagccacagctcctcagagactgacagtcagttggacttctgt
ttgcccatggactcagagatgagctcagacttcaaactagacttggtggagaagctattt
gccattgacacagagcccaagacccccttcaccacacaggcaatggaagacttggatctg
gagatgttggctccctacatccccatggacgatgacttccagctgcgcagtctgacccca
gatgagcctttgacttgtgtgcaagtcaaatccctcaagagttcgccacttcaagtcaca
caagatgtcaacagctaccccagctcgccattcagctcaccaggaagtagcacagcctcc
ccagcaccgcttgagcctgtaaacgcccctcatcctgccaccatcatcgctaagaggacc
ccgcagttggacaaagaagtctcgctcaggaccctagcagctcagaacgcacagcgcaaa
agaaaactgggtgaaataaaggagataatcggacagggatatttgcttgaggaacagctg
gagcagggcaaaaagctgaaagcctcaaagtcaggaacaaccaccgccaccaccaccacc
accatacttctgctgccttcagatctggcgagtcggctcctgggcagcacgtcggagggc
accagttctctcttcaccctgccacagctcacccgctatgactgcgaggtcaacgccccc
ctgcagggccgtcagtacctgctgcagggggaggagctgctgcgcgcactggaccacatc
aactga
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