Scophthalmus maximus (turbot): 118286343
Help
Entry
118286343 CDS
T09850
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smau03016
]
118286343 (rtcb)
Enzymes [BR:
smau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118286343 (rtcb)
Transfer RNA biogenesis [BR:
smau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118286343 (rtcb)
Prokaryotic type
tRNA splicing ligases
118286343 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
118286343
NCBI-ProteinID:
XP_035466611
UniProt:
A0A2U9BPL2
LinkDB
All DBs
Position
12:24556301..24560812
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLNSNCWRVKKGFVPNMQVEGIFYVNDSLEKLIFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMSNPDAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFNHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYCEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSEVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaacgatgagctgcagtacctggataaactcaacagcaactgctgg
agggtgaagaaaggcttcgtgcccaacatgcaggtggaagggatcttctacgtgaacgac
tccctggagaagttgatctttgaggagcttcgtaacgcctgtcgaggaggaggttttggc
gggttccttccggccatgaagcagatcgggaacgtggcggcgctgcccgggatcgtacac
aaatccatcgggctcccagacgtccactccggatacgggtttgcgatcggaaacatggcg
gccttcgacatgagcaacccggacgctgtcgtgtctccaggcggcgtcggcttcgacata
aactgcggcgttcgtctgctgcggacgaacctggacgagcgcgacgtgcagccggtgaag
gagcagttggctcagtctctgttcaaccacatcccggtgggagtcgggtccaagggcgtc
atccccatgagcgccaaggacctggaggaggctctggagatgggggtggactggtccctg
agggaggggtacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgccccagctcggg
actctgggagcaggaaaccactactgcgagatccaggtggtggacgagatctacgacgac
tacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgcgtgatgatccacagc
ggcagcagaggcctcggacaccaggtcgccacagatgctctggttgccatggagaaggcg
atgaaaagggacaagatcgtagtgaacgaccgtcagctggcctgcgctcgcatcacctcg
caggagggccaggactacctcaagggcatggccgcggcgggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcacccgacaggccttctccgaggtcttcagcacaacgcca
gacgacctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaggtggaggag
cacatggtggacgggaggcagaagacgctgctggttcaccgcaaaggatccacccgggca
tttcccccacaccacccgctcatccccgtggactaccagctcacaggtcagccggtgctg
atcggagggacgatgggaacctgcagctacgtcctgacggggacggaacagggcatgacg
gagacgttcggcaccacctgtcacggagcgggtcgcgctctctcccgggcaaagtcccgc
aggaatctggacttccaggacgtcctggacaaactggccgacaagggcatcgccatccgg
gtggcttcacccaaactggtgatggaggaggctccagagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcacgacgccggcatcagtaagaaggcgattaaacttcgaccgatc
gctgtgatcaaaggttga
DBGET
integrated database retrieval system
