Scophthalmus maximus (turbot): 118286393
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Entry
118286393 CDS
T09850
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118286393 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118286393 (lamb1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
118286393
NCBI-ProteinID:
XP_035466715
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All DBs
Position
12:complement(22422947..22443582)
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AA seq
1783 aa
AA seq
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MSLITLIHITTTLALWCPVGGLLMPEFADVCTEGSCYPATGDLLIGRAHRLTASSTCGLE
RPERFCIVGHLEEEKKCFVCDSNEMYDDDANQVSHTVENVVTTFAHNRLKTWWQSENGVE
NVTIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSVDFGKTWQVYRYFAFNCESSFPGVST
GPMVKVDDIICDSHYSDFEPSTEGEVIFRVLDPAYPIKDPYSLRIQNMLKITDLRVNFIR
LHTLGDNLLDSRDEVTEKYYYALYDMVVRGNCFCYGHASECAPMDGAPTGTEGMVHGRCV
CNHNTVGLNCERCQDFYHDLPWRPAEGRNTHACKRCECNQHSASCHFDLAVYVTTGNMSG
GVCDDCQHNTVGRQCEQCAPFFFQHPDRDLRDPSVCEPCNCDPSGSLEGGLCDSRTDVAA
GLISGQCRCKALVEGERCDHCRQGHHGLGEGPQGCLPCTCSPLGTLPGGNSCDPESGKCF
CKRLVDGHNCDQCLPQHWGLSNDMDGCRACDCDQGGALNNNCDPHSGQCVCREHMFGRRC
DQVESGFYFVALDHYTYEAEDAEHGPGVTVVPRPYPLDRSPTWTGMGFVNVPEGAYLEFN
INNIPDSMDYDVLIRYEPQLPEQWEKVNIRVQRPVFNPPNYSSLCGNSVQSGDEQSISLP
PGSRHVLLVRPVCLETGQNYTLRLSLPLYSSLSDMQSPYTLIDSLVLIPRVREMDMFHGV
DGDGAWDTFQRYRCLESSQSVVKSPMTDICHDYIFSVSALLHDGAMACQCDPQGSLSAVC
EPSGGQCQCRPNVVGRNCDHCAPANFLFGPAGCRPCDCDPRGSESAFCHEATGQCECVPG
ATGRQCSHCLPGFWGFPQCRPCHCNGHSDYCHPQTGECQGCRDFTGGHHCERCLEGYHGD
PELGSGGHCRPCMCPDGPRSGRQFADSCYLLAYSNQLVCVCSAGYKGARCDECAPGYFGN
PLVPGGRCMPCQCNSNIDMHDPGSCDARTGACLKCLHHTDGHACQQCKPGYYGEAAAQSC
RKCMCYSEGTEPEACSSPDGCECDRHTGQCPCRPNVVGQNCDRCVADTWNLAGGTGCQRC
DCDRVHSLGSSCDEVTGRCSCRPGFGGRTCQECRELFWGDPEVKCHACDCDPRGISSEQC
HSATGQCACVEGVSGARCDECARGYQGEFPDCERCHQCFASWDAVVGELTNQSRRLEAQV
TEILTSGVTAPYKELIGSLEKNSKAVREIVEGNPAAVQLELTQELMHEISGLMSYLHGKL
NTTEETLDLFHNDANSTDAKLDALSNEANRLERSVQELRQQVYDAKNANLQGAMDTITAA
HAQSATAELRANASVSDPGNTAEQSAAVRRATEEKLSGGQKEFDRRHQKNSQKLEKLSGE
LDKFDLSPLGEKTCGGAAEGAGCAGSPCGGLGCVGEDGAPRCGGEGCEGVVATSHTAVKS
AKDLDREILAAMQEVDKLSRMVWEANVRANEAKANAMEVLVKSNRSKERVEQSNEQLRNL
IKDIRDLLTNEKADVSVIETVANEVMALEMPTSPEKLQELTREIREKVGTLSSVETILNQ
SAEDIRAAEALLNQAKAASEQASSMKERAEVVKAALDESERAQSVAMGAIQLAQNNTNGT
LDLLISVESETASSELKLGNTTGRLLQLEREVGLLRQNNLEVNRLAETADWIMDQARLEA
EEAQQEFDGEVKERLEAVEDLVEDKGESVLQARRKADELRQEAKDLLAESSSKMQRLGEL
EGDYEANQRVLEAKAAELVELEQTVRRILEEISYKVTLYSTCV
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcatcaccctcatccacatcacaacaactttggccctgtggtgtcccgtcggc
ggcctgctgatgccggagtttgcggatgtctgcaccgagggcagctgctacccggccaca
ggggacctgctcatcggccgtgcgcacaggctcactgcctcctccacctgcggcctggag
cggcccgagcgcttctgcatcgtgggacatctggaggaggagaagaaatgtttcgtgtgc
gactccaacgagatgtacgacgacgacgccaaccaggtcagccacacggtcgagaacgtg
gtcaccaccttcgcccacaaccgcctcaaaacctggtggcagtcggagaacggcgtggag
aacgtgaccatccagctggacctggaggccgagtttcacttcacacatcttatcatgacc
ttcaagacgttccgtccggctgccatggtgatcgagcgctcggtggacttcgggaagacg
tggcaggtttaccgttacttcgccttcaactgcgagtcctcgttcccgggcgtgtccacc
gggcccatggtcaaagtggacgacatcatctgcgactcccactactcggacttcgaacct
tccaccgagggagaggtgatattccgggtgctggaccccgcctacccgatcaaggacccc
tacagcctgaggatacagaacatgctgaagatcaccgacctccgcgtgaacttcatcagg
ctccacacgctgggcgacaacctgctggactcccgcgacgaggtgacggagaagtactac
tacgccctctacgacatggtcgtccgcggcaactgcttctgctacggccacgcctccgag
tgcgccccgatggacggcgccccgacgggaaccgagggcatggtccacggtcgctgtgtg
tgtaaccacaacaccgtggggttgaactgcgagcgctgccaagacttttaccacgacttg
ccctggagaccggcggagggacgaaacacccacgcctgcaagaggtgcgagtgtaaccag
cactcggcctcgtgccacttcgacctggccgtgtacgtgacgacgggcaacatgagcggc
ggcgtgtgcgacgactgtcaacacaacacggtgggccgacagtgcgagcagtgcgcgccg
ttcttcttccagcaccccgaccgagacctgcgggaccccagcgtctgcgaaccgtgtaac
tgcgacccgtccgggtccctggagggcggactgtgcgactcgcggaccgacgtggccgcc
gggctgatctcgggccagtgtcgctgcaaagccctggtggagggcgagcgctgcgaccac
tgcagacagggacaccacggcctgggagaggggcctcagggctgcctgccgtgcacctgt
agcccgctgggcactctgccgggaggaaactcctgcgatccagagtcggggaaatgcttc
tgcaaacgcctcgtcgacggacacaactgcgatcagtgtctgccacagcactggggtctg
tccaacgacatggacggctgcagagcgtgtgattgtgaccagggcggggctctgaacaat
aactgtgaccctcactcgggacagtgcgtgtgcagggagcacatgttcggacgccgctgc
gatcaggtcgagtcgggcttctacttcgtcgccctcgatcactacacctacgaggccgag
gacgccgagcacggacccggtgtgacggtggtgccgaggccttaccctctggatcgcagt
cccacgtggaccggcatgggcttcgtcaacgtgccggaaggagcctacctggagttcaac
atcaacaacatcccagactccatggactacgacgtcctcatccgctacgaaccgcagctg
cccgagcagtgggagaaggtgaacatccgggtgcagcgtcccgtcttcaaccctcccaac
tactccagcctgtgcggcaactccgtccagagtggcgacgagcagtccatctcccttcca
cctggatccagacacgtgttgctggtgaggcccgtgtgtttggagaccgggcagaactac
accctccgcctcagtctgccgctctactcgtcgctcagcgacatgcagagcccgtacacg
ctcatcgactccttggtgctgattccccgggtgcgggagatggacatgttccacggcgtc
gacggcgacggggcgtgggacacgttccagcgctaccggtgtctggagagcagccagagc
gtcgtcaagagccccatgacggacatctgccacgactacatcttcagcgtctccgctctg
ctgcacgacggcgccatggcatgccagtgcgacccccagggttcgctcagcgccgtgtgc
gagcccagcggaggccagtgtcagtgtcggcccaacgtcgtcggcaggaactgcgaccac
tgcgcccccgccaacttcctgttcggccccgccggctgcaggccttgcgactgcgaccct
cggggctcggagagcgccttctgccacgaggcgaccggccagtgcgagtgcgtgcccggg
gccacggggcgccagtgctcccactgcctgccgggcttctggggcttcccgcagtgtcga
ccgtgccactgcaacggccacagcgactactgccacccgcagaccggcgagtgccagggc
tgcagggacttcaccggcggacaccactgtgagaggtgcctggagggttaccacggcgac
ccagagctgggttcgggtggccactgccgcccctgcatgtgccccgacggcccgcgcagc
ggacgccagttcgccgacagctgttacctcctggcctactccaaccagctggtgtgtgtg
tgcagcgctggctacaaaggtgccaggtgcgacgagtgcgcccccggttacttcgggaac
cccctggtgcccggcggccgctgcatgccctgccagtgcaacagcaacatcgacatgcac
gacccggggtcctgcgacgcccgcacgggcgcctgcctcaagtgcctgcaccacaccgac
ggccacgcgtgccagcagtgcaaaccgggctactacggcgaggccgccgcgcagagctgc
aggaagtgcatgtgttactcggagggcaccgaacctgaggcgtgttcgtcccccgacggg
tgcgagtgcgaccggcacaccggtcagtgtccctgccggcccaacgtggtcgggcagaac
tgcgaccgctgcgtcgccgacacgtggaacctcgccggcgggacgggctgccagcgctgc
gactgcgaccgcgtccactccctcggctcctcctgcgatgaggtcacgggacggtgctcg
tgcaggcctggtttcggcggcaggacgtgtcaggagtgcagggagctcttctggggcgat
ccggaggtcaaatgtcacgcgtgtgactgcgaccctcgcgggatctccagcgagcagtgc
cacagcgccacgggtcagtgcgcgtgcgtggagggtgtgtccggcgcgcggtgcgacgaa
tgcgccaggggctaccagggcgagttccccgactgcgagcgctgccaccagtgcttcgcc
agctgggacgccgtggtcggcgagctgaccaatcagagccggcgcctggaggcgcaggtg
acggagatcctgaccagcggcgtgacggcgccgtacaaggagttgatcggcagcctggag
aaaaactccaaggccgtgagggagatagtcgagggcaacccggcggcggtgcaactagag
ctgacgcaggagctcatgcacgagatcagtggtttgatgtcctacctgcacgggaagctg
aacacgacagaggagaccttggaccttttccacaacgacgccaactccaccgacgccaag
ctggacgcgctgagcaacgaggcaaaccggctggagcggagcgtccaggagctgaggcag
caggtgtacgacgccaagaacgccaacctccagggtgccatggacaccatcacggcagcg
cacgcgcagtccgcgacggcggagctgcgcgccaacgcctccgtcagcgaccccggcaac
acggcggagcagtccgctgcggtacggagagccacggaggagaaactgagcggcggccag
aaggagtttgaccgcaggcaccagaaaaactcgcagaagctggaaaaactgtccggcgag
ctggacaaattcgacctgtcgccgctcggcgaaaagacgtgcggcggtgcggctgaaggc
gccggctgcgccggctccccctgcggcgggttgggttgtgtcggcgaggacggagctccc
cggtgtggaggagagggatgcgagggcgtcgtcgcaacctcgcacaccgctgtgaaatcc
gctaaggacctggacagggagatcctggcggcgatgcaggaggtggacaagctctccagg
atggtgtgggaagccaacgtgcgtgcgaacgaggccaaggccaacgcgatggaggtgctg
gtcaaatccaaccgcagcaaggagagggtggagcagagcaacgagcaactgcgcaacctc
atcaaagacatacgtgacctcctcaccaacgagaaggcggacgtgtccgtgatcgagacg
gtggccaacgaggtgatggccctggagatgccgacctcgcccgagaagctgcaggagctg
acgagggagatccgggagaaggtgggcaccctgagcagcgtggagaccatcctgaatcag
agcgccgaggacatcagggccgccgaggcgctgctgaatcaggccaaggccgccagtgag
caggcgtccagcatgaaggagagggcggaggtggtgaaggcggcgctggatgagagtgag
cgcgctcagagcgtcgccatgggcgccatccagctggcccagaacaacacgaatggaact
ctggacctgttgatctccgtggagtcggagacggcctcgtcggagctgaagctcgggaac
actacgggtcgcctgctgcagctggagagggaggtcggcctgctgcgacagaacaacctg
gaggtgaaccggctggcggagacggccgactggatcatggaccaggcccgactggaggcg
gaggaggcccaacaggagtttgacggggaggtgaaggagaggctggaggcggtggaggac
ctggtggaggataagggcgagtcggtgctgcaggcgcggaggaaggcggacgagctgcgg
caggaggccaaagacctgctcgcggagagcagcagcaagatgcagagactcggagagctg
gaaggcgactacgaggccaaccagcgcgtcctggaggccaaagccgcggagctggtggag
ctggagcaaactgtccgccgcatcctggaggagatcagctacaaagtgactctgtacagc
acctgtgtgtga
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