Scophthalmus maximus (turbot): 118286481
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Entry
118286481 CDS
T09850
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118286481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118286481
03019 Messenger RNA biogenesis [BR:
smau03019
]
118286481
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118286481
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118286481
U7-dependent histone pre-mRNA processing factors
118286481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
118286481
NCBI-ProteinID:
XP_035466854
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All DBs
Position
15:10806562..10814072
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKVEVVVPAEESDQLIIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELSMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELEGTEKHTLKLFKNIVLTHEVGMVLLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSVVIDLDIYQTRLAVMLQDMFGEECVDFSNGKNISVTVDGMTVHICLETRSVC
SEDDSTEDDSLREMVELAVQRLYDALNPAV
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaacgcaaagtagaggtggttgttcccgccgaggagagcgaccagctcatc
atccgtccgttgggtgctggtcaggaggtcgggaggtcatgtatcatcctggagttcaaa
ggaaggaaaattatgctggactgtggaatccaccccggcttggagggaatggacgctctc
ccctacatagacttgatcgatccagcggagatagacctgctgctcatcagccatttccac
ctggatcactgtggagctctgccatggttcctccagaaaaccagctttaaaggcaggaca
ttcatgactcacgccaccaaggccatctaccgctggctgctgtcggactacgtcaaagtc
agcaacatttctgcagatgacatgctgtacacagagacagacctggaggagagcatggac
aagattgagaccatcaacttccacgaggtcaaagaggtcgctggaatcaagttctggtgt
taccacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtcaag
ctgctgtacactggagacttctcccgacaagaagacaggcatctgatggcagctgagatt
cccagtgtcaaacccgacatcttaatcatagagtcaacttatggcacccacatccatgaa
aagagggaggagcgtgaagctcggttctgcaacacagtccacgatattgtcaacagagag
ggtcgctgcttaatccctgtatttgccttgggacgagctcaagagctgctgctcatcctg
gatgagtattggcagaaccacccggaactccacgacattcccatctactacgcctcctcc
ttggccaaaaagtgcatggccgtgtaccagacctatgtcaacgcaatgaacgataagatc
cgcaaggccataaacatcaacaacccctttgtcttcaaacacatcagcaacctcaagagt
atggatcattttgatgacatcggtcccagcgtggtgatggcatctccaggcatgatgcag
agcgggctgtccagagagctctttgagagctggtgcactgacaagagaaacggagtcatc
atcgctggatactgtgtggagggaacactggccaagcacatcatgtctgagccggaggag
atcaccaccatgtcgggacagaagctgcaactgaagatgtcagtggactacatctccttc
tccgctcacacagactaccagcagaccagcgagttcatcagagcgctcaagcccccacac
gtgatcctggtccacggggagcagaatgagatggcccgtctgaaggctgcactgatccgg
gagtatgaggataatgaccaggttcacatcgaagttcacaaccctcgcaacacagaagct
gtcaccctcaacttcagaggagagaaactggccaaggtgatgggttctcttgctgataag
aagtgtgcccagggtcagagggtgtcgggcatactggtgaagaagaacttcaactaccac
atcctcaacccctctgacctatccacttacacagagctgtcaatgagcacagtgaaacag
acccaggccatccccttcactggaccttactcactgctcgtctgccatctgaggaacctc
acgggcgatgtggaagagctggaaggaaccgagaagcacaccttgaagctctttaaaaat
atcgttctgacccacgaggtcggcatggtgctgctggagtggatagcgaaccctctgaat
gacatgtatgccgacgctgtcaccactgtagtgctggaagttcagtcgaacccgaaggct
cagaaagtcatggagacccagagtgttgttatagacctggacatctatcaaacccgactg
gcggtcatgctgcaggacatgtttggagaggaatgcgtggatttcagcaatggcaaaaac
atctctgtgacagtcgacgggatgacggttcacatttgcttggaaacgaggtcggtgtgc
tccgaggatgacagcacagaggacgactctctcagggagatggtggagctggcggtgcag
cggctctatgacgccctcaacccggccgtgtga
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