Scophthalmus maximus (turbot): 118287109
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Entry
118287109 CDS
T09850
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118287109 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smau03400
]
118287109 (msh2)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118287109 (msh2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
118287109
NCBI-ProteinID:
XP_035467803
UniProt:
A0A2U9CMV3
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Position
16:complement(16244865..16257679)
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AA seq
935 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFVFSMPEKPDTTFRIFDRSDYYTVHGKDATFAAREVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFAKDLLLVRQYRVEVYRNHGKSSKEHDWRIEYKA
SPGNLSQFEEILFGGGTGAEGSAGVVAVRVATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQLGPKECLLAQGEGNADCNKLREVVERGGVLVSDRKKAEFSSKDMVQDL
NRLLRAKRGETAASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVKALNLFQASPDDTSRTHSLAGLLNRCRTPQGQRLINQWIKQPLMDRTKIEERLD
MVESFVCDPELRHTCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRAYQAVSHIPALVAAL
ERYSGSYQVLLEAMFLSPLRDLLTDFAKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
RDKMDSLDKSMQAVLNSAARELGLDAGKTVKLESNAVLGFYLRVTCKAEKSLRTNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQALSDVIAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDPDTAFIPNDITFVQGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQLKG
VSTFMSEMLEIAAILRSATENSLVIIDELGRGTSTYDGFGLAWAISEHIASRISCFCLFA
THFHELTALAAHESTVHNLHVTALTSHDTLTMLYRVKPGVCDQSFGIHVAELASFPPSVV
AMAKEKAEELEEFQEPAGENSKRDEEPEAKRRLKDKQMGENLIQDFLEKAKSLPVASMGE
EEVKAQLRRMKQELVTKNNTYISEILARCVPVNTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacctgtccatggacagcgcggccgagcacggcttcctg
aacttcgtgttctccatgccggagaaaccggacaccacgttcaggatattcgaccgcagc
gactactacacggtgcacgggaaggacgccacgttcgcggcgagggaggttttcaagacc
aacggcgtcatcaagtatctgggctcagggagtcgcaagctggagagcgtcgtcctgagc
aagctgaacttcgaggcctttgcgaaggacttgctgctggttcggcagtacagagtcgag
gtgtacaggaaccacggcaagagcagcaaggagcacgactggaggatcgagtacaaggcc
tctccgggaaacttgagtcagtttgaggagattctgttcggcgggggaaccggagccgag
ggctctgcgggagttgtagccgtgcgcgtcgccacaggagccgatgggcagcgcgtggtc
ggcgtcggctatgtggacgctgcccagcggacgatgggagtgtgcgagtttccagacaac
gagatcttctccaacctggagtccctgctggtccagctcggccccaaagagtgcctcttg
gcccagggtgaaggcaacgctgactgcaataaactacgagaggttgtggagcgcggtggc
gtgttggtgtctgacaggaagaaggcagagttcagtagcaaggacatggtccaggatctc
aaccgactgctgagagccaagagaggcgagaccgcagccagcaacacactgcctgagttg
gacaagcaggtggccatgtcctgcttggctgctgtggtgcgtttcctcgaacttctctcc
gacgagtccaacttcaactcctttagcttgacgacgctggacctgggtcagtacatgagg
ctggacaacgccgcagtgaaggctctcaacctcttccaggcttcgcccgatgacaccagc
aggacgcactcgcttgccggtctgttgaacaggtgccgcacgccgcagggtcagcggctc
atcaaccagtggatcaaacaaccactgatggacagaaccaagatagaggagaggctggac
atggtggagagtttcgtgtgcgaccccgagctcaggcacacctgccaggaggacctgctg
cgccgctttcctgacctccaccgtctggccaagaagttccaccgtcacagtgcgacgctg
caagactgctaccgcgcctaccaggccgtgagccacatccctgcccttgtcgccgcgctg
gagagatactcgggcagctaccaggtcctgctggaggcgatgttcctttctcctctcaga
gacctgctgactgacttcgccaagtatcaggagatgattgaaaccactctggacatgaac
cagatagaccatcacgagttcctggtgaaggcgtcgttcgatccggtgttgagcgagctg
agggacaagatggactcgctggacaagagcatgcaggccgtgctgaacagtgcggccaga
gaactaggtctggatgccggtaagacggtgaagctggagtcaaacgccgtgctgggtttt
tacctgagagtcacctgcaaggcggagaagtctctgaggaccaacaagaagttcaccacg
ctggacgttcagaagaacggcgtgcgcttcactaacagtaaactgagctctctgaacgag
gagtacaccaagagcagggaggagtatgaggaggcccagaacgctatcgtcaaagagatc
atcaacatcgcctcaggctacgtggaccccctccaggcactgagtgacgtgatcgcacaa
ctggacgcagtggcgagtttcgcagtggcgtccgtctccgctcccgtgccgtacgtgcgg
cctcgcctcttggccgacggctgcaggcgcatggagctgctgcaggccagacatccctgc
atggagaccgacccggacacggccttcattcccaatgacatcaccttcgtccagggagag
aagaacttttatattataacgggaccgaacatgggaggcaagtcaacgttcatccggcag
gtgggcgtgatcgctctgatggctcagatcggctgctttgtgccgtgtgagaaggccgag
ctcagtgtgattgacagcgtcctggcccgggtgggagcgggggacagccagttgaagggc
gtgtccacctttatgtccgagatgttggaaatcgctgccattctgcgctcggccacggag
aactcgctggtcatcatagacgagctgggcaggggcacgtccacgtacgacggcttcggc
ctggcctgggccatcagtgaacacatcgcctccaggatcagctgcttctgcctgttcgcc
acgcacttccacgagctgacggcgctcgcggcgcacgagtccacagtgcacaacctgcac
gtcactgcgctcacctcccatgacacactcaccatgctgtacagggtgaaaccaggtgtg
tgcgaccagagttttggtatccacgtcgccgagctggcttctttcccaccgtcggttgtc
gccatggcgaaggagaaggccgaggagctggaggagttccaggaacctgcgggggagaat
tcaaaacgggacgaggaacccgaggccaagaggcgactcaaagacaaacaaatgggggag
aacctgatccaggacttcctggagaaggccaagtctcttcccgtcgcctccatgggtgag
gaggaggtgaaggcccagctccggagaatgaagcaggagctggtcaccaaaaacaacacg
tacatctcggagatcctcgctcgctgcgttcctgtaaacactgcctga
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