Scophthalmus maximus (turbot): 118287211
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Entry
118287211 CDS
T09850
Name
(RefSeq) TATA-box-binding protein-like isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118287211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118287211
03021 Transcription machinery [BR:
smau03021
]
118287211
Transcription factors [BR:
smau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
118287211
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118287211
RNA polymerase III system
TFIIIB
118287211
RNA polymerase I system
SL1/TIF-1B
118287211
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Saposin
Motif
Other DBs
NCBI-GeneID:
118287211
NCBI-ProteinID:
XP_035468077
LinkDB
All DBs
Position
16:20497369..20501820
Genome browser
AA seq
300 aa
AA seq
DB search
MIRSRSCQVMEERMLEMFFDKHIANEEKMSDEPEGPPPESGQEDTDETEQMTEDVGRSAV
NCISLDCSSQNPTGAAEVSGTSSLQQLGDASVRSDAPGTSAIPLIRQQQIIPRIRNVNSS
VKLGCRLDLNFIAHNTWNVEYKKSGQLIMRIRKPRTTAMIYSSGRVICSGARSEEESRTA
ARRFAYKLMKLGLPVSFLNFKIQNVMATCSSFPVSLERLTQAYPQHCSYDPELFSGLFFK
GIPGMTVNVFANGEMAFLGAKSTAEIYSAIDTICPMLSCFRRQGGQTQCTLTSLKEIKHK
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgatcagatccaggtcctgccaagtcatggaggagaggatgcttgaaatgttttttgat
aaacacatcgcaaacgaagagaagatgagtgatgaaccggaggggccgccgcccgagtcc
ggacaggaagacacagatgaaaccgaacaaatgacagaggatgtaggcagatctgctgtg
aactgcattagtctggactgcagctcccagaatcccactggagcggctgaggtctcaggt
acatcgtcactgcagcagctgggagacgcctccgttcgctcagatgcccccggcacgtct
gcgattccgttgattaggcagcaacaaatcattccacgaatacggaatgtcaactcttct
gtgaagctgggctgtcgtctggacctcaactttatcgctcacaatacgtggaacgtagag
tacaagaaaagcgggcagctcatcatgaggatccgtaagccgagaaccacagcgatgatc
tattcatctggacgtgttatttgttcaggagccaggagtgaggaagagtcacgaactgca
gccaggaggtttgcctacaaattgatgaagctgggcttacccgtctcctttctgaacttc
aagattcaaaacgtgatggccacctgcagctccttcccggtctctttggagcgactcacc
caggcctaccctcaacactgcagttatgatcctgaactgttttctggcctcttcttcaaa
gggatacctggcatgactgtgaacgtctttgcaaatggagagatggcgttcttaggagcc
aaatccacagctgagatctacagcgcgatcgataccatctgtccgatgctgagctgcttc
aggaggcagggaggacagacacaatgcactctgacgtccttgaaggaaataaaacataaa
tga
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