Scophthalmus maximus (turbot): 118287726
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Entry
118287726 CDS
T09850
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03013
Nucleocytoplasmic transport
smau03015
mRNA surveillance pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118287726 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
118287726 (acin1b)
03015 mRNA surveillance pathway
118287726 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118287726 (acin1b)
03041 Spliceosome [BR:
smau03041
]
118287726 (acin1b)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118287726 (acin1b)
Spliceosome [BR:
smau03041
]
Complex C
Other components
EJC/TREX
118287726 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
118287726
NCBI-ProteinID:
XP_035469108
LinkDB
All DBs
Position
12:complement(6077951..6097716)
Genome browser
AA seq
1212 aa
AA seq
DB search
MADEDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNTLVKRLKGALMLENLQKSSSSHS
GLQPNSQIGEEMCQNSFIKQYLAKQQELLRQRLEREAQQEEEADESPAVQEEDEDHSDND
CYVSDKQGPIPSQSALTRTEERGGGAASAVGHGMMMYSHDVGPSHTFRCQESPETPGARM
QRAMGNNEPPAPSPPRAVASLSVRVLGKPDRQGLPPAVPRAQEKEGTAPSEPGSAHAVLH
LSRSAGASAASNVNMDSDDDDGDDERDNDEDWGPGPGKARQANRVPPQPQQMPPSAPSAG
ARSKRKLQPPQHIPPPQVHHTPMQLRHPTPPPSPPPDLFPLPDTPKQSPPDPENQEGGGP
EAALGPRGGSFPSATMKRQDSDSSSRSSSPEPPAKCRPGPLSLLLHKMESEGGFRASSEM
SEEAAHSSAGSSRESPLQKLERKRQQENREMEEERQLKKEQERERGKAQEKEREKKRLEE
EKEKERKRLDEEEKLCRAEERENEQKRQEEEKEKERKRQDEEKKKREEKRIREEQEKRQQ
TTKKGRVVVTEAQDSGSSSDSDSKSDSSSCSSQSSSSSRDKSYPAQQPKKVGQEAEEEKK
TDPSNVAKKRHLSKREVSEPSAAAVTEVEPDAESSMADQPASGAEPESTENRLEESTTPK
AFAARKISLTSSKTPSAAADGGGAGEPESGTAAGRKRRWGSSTAVTVKKPSISITTDSLK
SLIPDIKINQEAVVELHPEELQLSGDEENVDNSLGDQDKGLKIRRTVTQVVPGDSQENGQ
TNEEEEAEKMETEKPRRTSRDNRKNSLSEEAVETQISVKLEGEAKKVTPSDSLVRRSISQ
QKSGVSVTIDDPVRTARQPSPPRGKITNIVHLTNLVRPFTLGQLKELLNRTGTLVEDGFW
IDKIKSHCFVTYATSEEAVATRAAIHGIKWPSSNPKVLSVDFCEQDELDFHKGVLKPVKE
DEHVVQPSAPPQTRLPPLMPERDRDRDRERERERDRGVAGVPGVRDLWAEREREMERRER
ARGEREWDRDKVREFARPGEEGRRSRSRDRERKRRERAKSKERKTDKKEKGDEPPAKLLD
DLFLKTKSAPCIYWLPLTEEQATQRLLDRTERREERERRRKEQQEDEEKKREEEKKERLK
VREKDGVAAASGGVAAGRGPDGDRERGRGRDREREREGDKRRDSGHRPRRTSAGAGSGRR
SRSRSNPRERRR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagatattacgcttgatgggaaacctctacagtcgctccgcgtcgcggac
ctcaaagccgcgctggagcagcgaaacctcccgaagagcgggcagaagaacacgctcgtc
aagcgactgaaaggggctctgatgctggaaaacctacagaagtcgtcctcctctcacagt
gggctgcagcccaactctcagataggggaggagatgtgccagaacagcttcataaaacaa
tacttggccaagcagcaggaactccttcgccagagactggagagagaggcccagcaagag
gaagaggctgatgaaagcccagcagtgcaagaggaggatgaagaccactcagacaacgac
tgctatgtctctgacaagcagggtcccataccctcccagtccgcactgaccaggacagag
gagagaggaggaggagcagcttcggctgtgggtcatgggatgatgatgtacagccacgac
gtgggccccagtcatacctttcgctgccaggagtcccctgagactccgggagcaaggatg
cagcgagccatgggaaacaatgagccaccggccccttctcctccacgtgccgtggcctcc
ctgtcagtgcgcgtcctgggcaagcccgaccgccaggggctgcccccggctgtgccccga
gcgcaggagaaggaaggcaccgcaccgagtgaaccgggatcagctcatgctgtcctccac
cttagccgatctgctggggcatcggcggcaagtaacgtcaacatggatagtgacgacgat
gacggagacgatgagcgtgacaacgatgaggattgggggcctggtccgggcaaggcaagg
caggccaacagagtccccccgcagccgcagcagatgccccccagtgccccatcagcaggt
gcgaggtccaagcgcaagcttcagcccccgcagcacatcccaccaccacaggtgcaccac
acccccatgcagctccgccaccccacgcctcctccatctccacccccagacctgtttccc
ctccctgacactcccaagcagagtccaccagacccagaaaaccaggagggaggcggccct
gaggctgcacttggcccaagaggaggctctttcccatctgctactatgaagaggcaagac
tcagattcaagttctcgttccagcagccctgagccccctgcgaagtgtaggccaggaccc
ctctctctgctcttacacaaaatggagtcagaggggggttttcgtgcatcttcggaaatg
tcagaagaggccgcacactcctctgctgggtcttccagggaatctccactgcaaaaattg
gagaggaagaggcaacaagagaacagagagatggaggaagagaggcaactaaagaaagag
caggagagagaaagaggtaaagcacaagaaaaggagagggagaagaaacgcctggaagaa
gagaaggaaaaggagaggaaacgactggacgaagaggagaaactgtgcagggcagaggag
agggaaaatgagcaaaagcgtcaggaagaggagaaagaaaaagagagaaaacgccaggat
gaggagaagaagaaaagagaggagaaacggatcagggaggagcaggagaagaggcagcag
acaaccaagaaaggcagggtggttgtgaccgaggcgcaagattcaggttcctcatccgat
tccgactccaaatccgactcctcttcatgctcatcacagtcgtcgtcctcctccagggat
aaatcctaccctgcccagcagccgaagaaggtaggacaagaggcagaggaagagaaaaag
actgacccgagcaacgtagcaaagaaacgacacctttctaaaagggaggtgtcagagccg
agcgcagctgctgtgacggaggtggagccggacgccgagagttccatggccgatcagccg
gcgtccggggccgagccggagagcaccgagaaccggctggaggagagcaccactcctaag
gctttcgcagctcgcaagatatccctgaccagcagtaagacgccttcagccgccgcagac
ggaggaggagcgggagaacctgaatcgggaactgcagccgggcggaagaggcggtggggc
tccagcacagcagtcaccgtcaagaaaccatcgatcagcataaccactgactcactgaag
tctttgatcccggacattaaaataaaccaggaggccgtggtggagcttcacccagaggag
ctgcagctgtctggggacgaggagaacgtggacaacagcctcggtgaccaggacaaagga
ctcaagatccgtcgcaccgtcactcaggtcgtcccaggcgacagccaggagaatggacag
accaacgaagaggaagaggcggagaaaatggagacagagaaaccgcgcaggacttcccgg
gacaacaggaagaacagtctgtctgaggaagccgtggagacacagatatctgtcaagctt
gagggagaggcaaagaaagttacccccagcgacagtctggtgcgtcgctctatcagtcaa
caaaagtcaggcgtgtctgtcaccatcgacgaccccgtccgcaccgcccggcagccctcg
ccgcctcgtggcaaaatcacaaatatcgtccatctgaccaacctggtgcgacccttcact
ctgggccagctgaaggagctgctgaaccggacaggcaccctggtggaagacgggttctgg
atcgacaagatcaagtctcactgcttcgtcacatacgcaacgtcagaggaggccgtcgcc
accagagcggccatccatgggatcaaatggccctcgagcaatcccaaggtgctcagcgtc
gacttctgtgagcaggacgagctggactttcacaaaggtgtcctgaagccagtcaaagag
gatgaacatgtcgtccaaccgagtgcccctcctcagacccggctgcccccgctgatgccc
gagcgagaccgtgacagggacagggagcgcgaacgggaacgggaccgaggggtcgcagga
gtcccgggagtgcgcgacctgtgggcggagcgtgagagggagatggagcgccgcgagcga
gcccgcggtgaacgggagtgggaccgcgacaaggtccgggaatttgcaaggccgggcgag
gagggaaggcgatcccggtccagagacagggagcggaagaggagggagagggcgaagagc
aaggagaggaagacggataagaaggagaagggagatgagcctccggccaaacttctggac
gatttgttcctcaagaccaaatcggctccgtgtatctactggctccccctcacagaggag
caggcgacgcagaggctcttggaccgcacggagcggcgcgaggagcgcgagcggaggcgc
aaagaacagcaagaggatgaggagaagaagcgggaagaggagaagaaggagaggctgaag
gtccgggagaaggacggcgtggcggctgcaagcggcggagtggcggccggccgaggacct
gacggagaccgagagaggggccgcggccgcgaccgtgagcgagagcgagagggcgacaag
aggagggacagcggccaccggccccggcgaacctcggcgggtgccggcagcggacggcgg
tctcgcagtcgtagcaaccccagggaaagacgccgctga
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