Scophthalmus maximus (turbot): 118288121
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Entry
118288121 CDS
T09850
Symbol
si:ch211-141o9.10
Name
(RefSeq) probable endonuclease 4 isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118288121 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smau03400
]
118288121 (si:ch211-141o9.10)
Enzymes [BR:
smau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
118288121 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
118288121 (si:ch211-141o9.10)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-GeneID:
118288121
NCBI-ProteinID:
XP_035469832
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All DBs
Position
16:complement(8555478..8569078)
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AA seq
349 aa
AA seq
DB search
MGPKKRGARKRKGEEALEGEEEEEETEEKEADQRADRRRKGRGTKKYIGAHVGIQGGIWK
AVESCAEMGGSSFALFLGSQRSWKRPPLDQTAAARFREQRSLHGFDPAHILPHGSYLMNC
GSPKEDVFEKSQALLVEELSRCSLLGLNLYNFHPGSSLGSITTEQCVDKIAGSINHAHRQ
TPAVVTVLENMSGQGSTVGGKFSELKSIIDKVRDQTRVGVCLDTCHAFAAGYDLAAEGGV
SAMLNEFDQEVGLHYLKAIHLNDSKGPDTDKQMMFCALGTFWNFLFGTLGCHLDRHEDVG
KGHIGLPAFRDIVNEPRLDNIPLILETPGRPGFEFAEQIEFLYSLCEKK
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgggtccgaagaagagaggtgcaaggaaaaggaagggcgaagaggctctggaaggagag
gaggaggaagaggaaaccgaggagaaggaggccgatcagagagcagacaggaggaggaag
ggcagaggaactaagaaatacattggcgctcatgttggaattcaaggtgggatttggaaa
gcggtggagtcctgcgcggagatgggaggcagcagtttcgccctgtttctgggctcccag
cggtcatggaagaggcccccactggaccagacagcagcagccaggttccgggagcaacgt
tcccttcatgggtttgatccagctcacatcttgcctcatgggtcctacctgatgaactgt
gggtctccgaaagaggatgtgttcgagaagagccaggccctgctggtggaggagctcagc
cgctgcagcctactgggcctcaacctctacaacttccaccctggctcctcgctgggctcc
atcaccactgagcagtgtgtggacaagatcgccggctccattaaccacgctcaccggcaa
acaccggctgtggttacagtgttggagaacatgagcggtcagggcagcacagtgggcggt
aagttctctgagctgaagagcatcatagacaaagtgagagaccagaccagagttggagtg
tgtcttgacacctgccatgccttcgcagcaggatatgacctggctgcagagggaggagtg
agtgccatgctcaatgagtttgaccaggaagtgggactccactatctcaaagccatccac
ctcaatgactccaaaggtccagacacagataagcagatgatgttttgtgctctaggaact
ttctggaattttttgtttggtacactgggctgccacctcgaccgccatgaagatgtcggc
aaaggtcacattggactccctgctttccgagacattgtcaatgagcccaggcttgacaac
atccctctgatactggagacacctgggcggcctggattcgagtttgctgagcagattgaa
tttctctattccctctgtgagaaaaaatag
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