Scophthalmus maximus (turbot): 118288523
Help
Entry
118288523 CDS
T09850
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118288523 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118288523 (xab2)
03041 Spliceosome [BR:
smau03041
]
118288523 (xab2)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118288523 (xab2)
Spliceosome [BR:
smau03041
]
Complex B
Other components
Prp19-related factors
118288523 (xab2)
Complex C
118288523 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
118288523
NCBI-ProteinID:
XP_035470625
UniProt:
A0A2U9CTC7
LinkDB
All DBs
Position
17:13860703..13867597
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLNGNSDVVFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGHKSTLNMIYERALKELP
GSYKLWYSYLRERRKQVKGKCITEPAYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRSFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVDRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPNKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEIGQDEDDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVDTQERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKAITSATGTVSDLAPGQMGIDDMKMLEQKAQQIAAEAEQ
DKPKPKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDEGDDEDQGPEEVQLEQKTVPT
AVFGGLKED
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgttaaacggaaattcggatgttgtgtttgaggacgatgacctgccctacgaa
gaggagatcatcaggaacccgtactcggtcaagtgctggatgcgttacatcgaattcaaa
cagaatggacataaatccaccctgaacatgatatatgagcgggctcttaaagagctgcct
ggcagctataagctgtggtacagttatctgagagagagaaggaaacaagtcaaggggaaa
tgtatcactgaaccggcctacgaagaggtcaacaattgccacgaaagagcactggtgttc
atgcataagatgcctagaatatggctagattactgccagttccttgtatctcaatgcaag
atcacaagaagccggcgatcatttgaccgtgcactccgagctcttcctgttactcagcat
ccacgcatctggcctctgtatctccgctttgtccgcaacctgcccctgcctgagactgct
atccgggtgtatcgcaggtatctcaagctttctccagagaatacagaggaatacatcgac
tacttacggtctgttgaccgcttggatgaagcggctgtgcgactagcagctgttgttaat
gacgaaagttttgtgtccaaagagggcaagtctaactatcaactttggcatgagctgtgc
gacctgatctcccagaaccccaataaggtgacctccctgaatgtcggagccatcatccga
ggaggcctcactcgcttcacagatcaacttggaaaactttggtgctctttagctgactat
tacatcaggagtggccactttgagaaagcccgtgatgtgtatgaggaggccatcctgaca
gtcgtaacagtaagagattttacacaagtgtttgatagctacgcccagtttgaggagagc
atgattgctgccaagatggagaccactgctgagattgggcaggatgaagatgatgatgta
gaccttgagcttagactggcccgctttgagcaactgatagcccggcgacccctcctcttg
aacagtgtcctactgaggcagaacccccataatgtgcatgagtggcacaagcgggtgaaa
ttgtatgagggcaatccacggcagattatcaacacgtatactgaggcagtacagacggtg
gatccgatgaaggccacagggaaacctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagctggatgatgccagaacaatcttcgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagcttcgt
cacgagaactatgaacaggcactgcgcatactaaggaaagctacagccattccatctaag
aaagcagagtactttgatgtgtctgagccagtccaaaacagggtgtacaagtccctgaag
gtctggtctatgctggcagacttggaggagagtcttggcacgttccagtctacgaaagca
gtgtatgaccgcattattgacctccgcattgcaacgcctcagatcatcattaattatgcc
atgtttcttgaagagcacaactacttcgaggaaagcttcaaggcatatgagcgtggtatc
gctctctttaggtggccaaatgtttatgacatttggaacacttaccttaccaagttcatc
gaccgttatgggggcaagaagctggagagagctagagatttatttgaacaagccctggat
ggctgccccgccaagtttgccaagaccatttacctgttgtatgcgaagttggaggaggag
tatggcttggcaagacatgctatggctgtatatgaaagagcaacacaggcagtagatact
caggagagacatcacatgttcaatatctacatcaagagagcagctgaaatctacggggtt
acctataccagagcaatttatcagaaagctattgaggttcttcctgatgagcatgcaagg
gacatgtgtcagcgatttgctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctattcctactgctcccagatctgtgacccaagggtgaccgctaatttctggcag
gcctggaaagaatttgagatccgccatggaaatgaggacaccataagagaaatgctgagg
atcaaacgcagtgtccaggcaacatacaacactcaggtcaactttatgtcctctcagatg
atgaaggccataacaagtgccacaggcactgtgtcagatcttgctcctggccagatggga
attgatgacatgaagatgttggagcagaaggcacaacagattgctgcagaagcggagcag
gacaaacccaagcccaaagagaagattctctttgtcaggagtgacacgtctcggagtgag
ttggctgagcttgccaaacaagccaatcctgatgagatcgacattgatgatgaggatgag
ggcgacgatgaagaccaaggaccagaggaggtgcagcttgaacaaaagactgtccccaca
gctgtgtttggaggacttaaagaggattga
DBGET
integrated database retrieval system
