Scophthalmus maximus (turbot): 118289217
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Entry
118289217 CDS
T09850
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118289217
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118289217
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118289217
NCBI-ProteinID:
XP_035471920
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All DBs
Position
12:1416425..1555411
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AA seq
680 aa
AA seq
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MEKVAQQKRWRTTALHIVSSLCSAASVAFCVLLSINAADVRHRVVALESGNGAQTLIRAP
GHSMDDFNSLIQQRVDELLSQRSYENFVKIRTARQTSPECNCPPGPPGKRGRRGRNGDPG
PPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPG
PPGPRGPPGDTGKDGPRGVPGLPGDPGQPGEAGLVGPEGPQGPMGSLGPPGVPGVDGLKG
DLGIPGLDGVPGAKGEMGEQGEKGDMGEEGPKGDIGEKGDAGSSAAGIKGEPGEPGRSGH
KGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELGPQGKGEQGETGPVGPK
GSEGEAGTPGPKGSKGETGDKGDLGSGGPRGPPGQKGDQGATEIIDYNGNIQEALQKITT
ITVTGPAGPPGPMGPQGTKGDRGMPGLPGLDGERGYKGSKGDMGMPGASGEKGTTGLRGI
PGVNGVKGEKGDLGTPGLQGPSIIGPPGPLGPHGPPGPMGPHGFTGAKGEAGLHGVKGMR
GEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPSGPAGPAGPKGDIGERGASGEPGPRGPY
GLPGAAGTPGLDGLPGLRGEKGDVGESGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLG
PDGLPMPGCWQKGVTPWLVA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtggcgcagcagaagcgttggcgcacgacggcgctgcacattgtctcgtct
ttgtgttccgcggcgtccgtcgccttttgcgtcctcctgagcattaacgcggcggacgtt
cggcaccgggtcgtggctttggagagtgggaacggcgcgcagaccctaatccgtgccccc
ggccactccatggatgattttaattcgctgattcaacaacgagttgacgagcttctctcg
cagcgctcctatgaaaattttgtgaagattcggactgccagacaaacgtcacctgagtgc
aactgccctccaggacctccaggaaagcgcggaagaagaggccgcaatggagatcctgga
cctcctggccctccaggtccgaagggtgaaaagggggatcaaggcgaccagggaccacgg
atggtcttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcga
cggctcattaagggagaccaggggcaggcaggaccacctggccccccagggccaccgggc
cctcctgggcctagagggcctcccggggacacaggcaaagatgggcccagaggcgttcct
ggtctaccaggcgatccagggcagcctggagaagcgggacttgtggggcctgaggggcca
caggggccgatgggttctctcgggcctcctggtgttccaggtgttgatggactgaagggg
gatcttggcatcccaggattggacggtgtccccggagccaagggtgaaatgggagagcaa
ggtgaaaagggtgatatgggcgaagaaggtccgaaaggtgatattggggagaagggagat
gcaggctcctctgcagccggcatcaagggtgaacctggagagcctggacgaagtggacat
aagggagagccaggacttccagggctgcctggactcccagggataaagggggaacctgga
tttctcggaccccagggagagcctggacttcctggactcccgggaactaagggtgagaga
ggcgagctcgggccacaaggaaagggcgagcagggagaaaccggacctgttggaccaaag
gggtcagaaggagaggcgggaacacctggtccgaaagggtcgaagggggagactggcgat
aaaggagacctgggatctggcggcccgaggggcccccctgggcagaaaggagaccaaggg
gccacggaaatcatcgactacaatggaaacattcaggaggctttacagaagattaccact
attacagtgacgggtcctgctgggccacctgggccaatgggaccgcagggcacaaagggg
gatcgcggtatgcctggtctgcctggactcgacggagaaagaggctacaaaggttcaaaa
ggagacatggggatgcctggagcttcaggggagaagggaacaactggtttacgtggcata
cctggtgtcaatggggtaaaaggagaaaagggagatctaggtacacctggtcttcagggt
ccttcaattattggccctccagggccactagggcctcatggaccaccgggacccatggga
ccccatggtttcactggagccaagggtgaagccggattgcatggtgtgaagggcatgcga
ggggaaccgggacacaaaggggatcgcggacctttgggtctccctggagcctccggcttg
gacggcaagcccggaattaggggcatggatgggccttcaggtccagccggtcctgctggg
ccaaagggtgacataggcgagagaggagcatcaggcgagccaggaccaaggggaccttat
ggactacctggagctgctggaacaccaggcttggatgggttgccaggcttaaggggagag
aaaggcgacgttggggaaagcggagaaaagggggagaagggaaagaagggcaaaaaaggg
cctaagggcgagaaaggagaacagggtgcccctggattagatgcaccctgcccattgggt
ccagatggattaccgatgccgggatgctggcagaagggagtcacgccatggctggtagcc
tga
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