Scophthalmus maximus (turbot): 118289267
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Entry
118289267 CDS
T09850
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smau01001
]
118289267 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
smau04054
]
118289267 (ciita)
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
118289267 (ciita)
Protein kinases [BR:
smau01001
]
Serine/threonine kinases: Other
TAF1 family
118289267 (ciita)
Pattern recognition receptors [BR:
smau04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
118289267 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
nSTAND3
AAA_16
AAA_22
NLRC4_HD2
nSTAND_NTPase5
NB-ARC
NPHP3_N
AAA
TsaE
Motif
Other DBs
NCBI-GeneID:
118289267
NCBI-ProteinID:
XP_035472039
LinkDB
All DBs
Position
17:complement(7866576..7881978)
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AA seq
1411 aa
AA seq
DB search
MEVHTEIAVACRTLDLDTNKCMEAEYADTSFPLDTEEAADSLKSLRSLDMEHFDVSGGAD
AAPFEACAATDTGSITDARLEGHLSVCWLADRATHATDDMECLKGDAQCSTDAGFIDVAD
LFSPCSPTDSPTNPHNSFYSIMDHSMASDGIDDLEHVLKAAYSTRRCSTDGITDFRERKE
DEGGVDSHWGAKMYEVDQDPLDFGVLPDDLSEFMNDDYLEYLLGTDVFFGDTLLNCEEFG
NFGDVGVTTEQPCPGSQDKLTTKNNWRKRKRVSWSQQCTDEKTPFRPKRQREAGTMQPEE
ARNEAAVNQGTDAESEPNPEKTGVGLTTTPPRILHLHPSIQFITIPDAPGYQVIQTVRLS
PPVIRLPLPNTAATPTYIFVPSASPPCKHQVQPLSPVDDAVAPVQMSSSPPGSLSDTASK
AMSPICTSPISIRNKMSPCKQSPPPPTVLDVPQVVKDYILEVKSHMSQTCLEMEEGLSLT
SHYVDMQVSQRETLRSGKNTNKGLDKELIIMGDTDRQKSLLGHRQIFGDSNGGNSKRYIL
LLGNAGMGKTTLMRKLCLDWTRACIPQFDFVFLLDGKTLTLTKPMYSLQTLLLNLSSFVP
HCMDPDAVYAQILAASKRVLIIFDGFVELRDYEVLLQTQEKDLSTSLQKDNKAESYTVRQ
LYSAILQRVLLPGCTLLLTTRPRGSASQLLRRADSFLEVCGFTPADVEAYMSLYFPDPDH
RVSALDCLKNCSYLHLLCWNPGLCRLVCLVLEHSKTSDVLPRTLTGLCHRVLCSKMEKGS
WGTHPQAEVQTQISLHSKQEAQKQSMSNNQLKMCLKETPVRKSRAKVFTCSRIRRARGAK
KKETEENEVAEEEMKSVGREVHRTEEKELLSQLSSLAWEGVKANSSVLTRGPTFTAKLKA
FGLQTGLFLSHPMRRRQVVSSAETEGGGREERDEIKGGVEKQDQKENRGRTDDESFDASD
DHIMLWANPFLQSYLAGVHLSSSRAVSDRTFHQALPFQSGPKARRRPQREELDLTQRFAV
GLLFHNKTELQRLHTYTETSFCKMLVSKQALVTKHVEALSQGDLSPAQVLEACHYVYEAS
FTCADGNRGRGSTRLVAHLAANLPEVLSFHGVPLNPPDVFTVQKVLERGGNEGRSFCLDL
EDSGIRVSGLKALVGLNNINTYRACIADVITLWEQLEQSGEEGLLRGAVSKFKIHPLKVT
QVCHAEHLAKLVNIHMHKRLSDSSCTQSDSIWAEGVPAVKELHKLEFELGPEKGALYLPK
LWELLPGLHNLQHLDLENSKIRDTGSEKLADALASLCSLEILNLSQNCIGDHGVKKLATK
LRYLPKLHCLSLYSNVISDEGAESLAAVLPHMVSLTDLDVKYNKLTDVGAQSLGASLRNC
QKIKTLRMWNQCIPYGVFERLQLQDSRILWH
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgcacacggagattgcagttgcgtgcaggacgttggatttggacactaacaag
tgcatggaggcagagtacgcagacacaagcttcccactggatacagaagaagctgccgac
tcactaaaaagtctccgttctttggacatggagcacttcgatgtctcgggaggggcagat
gctgcaccttttgaggcctgcgcagcaacggacacaggcagcatcacagacgcccgtctg
gagggccacctcagtgtctgttggctcgctgacagggcaacacacgcaacagacgacatg
gagtgtttgaagggagacgcacaatgcagcacagacgctggatttatagatgtggccgat
ttattttcaccttgttctccaacagactcgcccactaacccacataactcattttactca
ataatggatcatagcatggcatcagacggtatagacgatttagaacatgtgttaaaggcg
gcttatagcacgagaaggtgcagcactgacggcataacagatttccgtgagagaaaagag
gatgaggggggagtggattcgcactggggtgccaagatgtatgaagtagatcaggaccca
ttggattttggagttctaccagatgatttatctgaattcatgaacgatgattacctagaa
tatctactgggcactgatgttttctttggtgatacgctgttgaattgtgaggaattcggt
aacttcggtgatgttggtgtgacaacagagcagccctgcccaggcagccaggacaaacta
actacaaaaaacaactggagaaaaagaaagagagtttcctggtcacagcagtgcactgat
gagaaaacaccattcagaccaaaaagacaaagagaagcaggtacaatgcaaccagaagag
gcacggaatgaggcagcagtcaaccagggcactgatgcagaatcagagccaaatcctgaa
aagacaggagtgggccttaccaccaccccaccaagaatccttcacctccatccctccatt
cagttcatcaccatcccagatgctccaggttatcaggtcattcagactgtgaggctctct
cctccggttattagacttccactccccaatacagccgccacacccacatacatatttgtt
ccttctgcctcaccgccctgcaaacaccaagtgcagccactctccccggtggacgatgct
gtagcgccagtccaaatgagttcatcgccacctggatctctgtcagacactgccagcaaa
gcaatgtctcccatttgcacctcgccaatctccatcagaaataagatgtccccatgtaaa
caatcacctcctcctcccactgtccttgatgtcccgcaggttgtaaaggactacattctg
gaagtcaaatcccacatgagtcaaacgtgcctggaaatggaggaaggccttagcctgacc
tctcattacgtggatatgcaagtgagccagagggaaactcttcgctctggaaaaaacaca
aacaaaggcctggacaaggagctaatcatcatgggagacacagatcgacaaaaaagcttg
ttggggcatagacagatcttcggagactcaaatggaggtaactccaaacgctacatattg
ctacttggcaatgcgggcatgggaaaaaccactctgatgaggaagctgtgtcttgactgg
accagagcctgcatcccacagtttgactttgtcttcttactagatggcaaaacgctcact
ttaacgaagcccatgtacagccttcagacactacttttgaacctctcctcgtttgtccca
cactgcatggaccctgatgcagtgtatgctcagatccttgcagcctccaagcgtgtgctc
atcatctttgatgggtttgtcgagttgcgcgactatgaagttctgctccagactcaagaa
aaagacttgagtacatcgttgcagaaagacaataaagctgagagctacactgtaagacag
ctatactctgccatccttcagagggtccttcttccgggatgcactcttctgcttactaca
cggccaagaggctccgccagccagcttctgcggcgggcagacagctttctggaggtgtgt
ggctttactcccgctgatgtagaggcatacatgtccctgtacttccctgatccagaccac
agagtatcggctttggactgcttaaagaactgcagctatttacatcttctctgctggaac
cctggactatgtcggttggtgtgtttggtgttggagcattccaaaacttcggacgtctta
ccgagaactttaaccgggctctgccatcgagttctttgttcaaaaatggaaaaaggcagt
tggggcacgcacccacaggctgaagttcaaacacaaatttccctgcattccaaacaagaa
gctcagaaacaaagcatgagcaataatcaactgaaaatgtgtctcaaagaaactccagtt
cgtaagtctagagcaaaggtttttacttgctctcgcattcgaagagctaggggggcaaaa
aagaaggagacagaggaaaatgaagtggctgaagaggagatgaagagtgttggacgggag
gtacatagaacagaggagaaagagttgctgtcccagctgagctctttggcctgggagggg
gtcaaagccaactcgtccgtcctcaccagagggccgacctttacagccaaacttaaggca
tttggcctccagacggggctcttcctctctcaccccatgaggaggaggcaggttgtttca
agtgctgagacggagggaggaggacgagaggaacgagatgaaatcaaaggaggagtagag
aaacaagaccagaaggaaaacaggggaaggacagacgatgagagctttgatgccagtgat
gaccacatcatgttgtgggccaaccccttccttcagagttacctggcaggggtccatctt
tcttcatccagggctgtatccgaccgtaccttccaccaggccctacctttccagtcgggt
ccaaaggctcgtcggcgacctcaaagagaggagctcgatctcactcagcgatttgcagtc
ggcctcctgtttcacaacaagacagagcttcagaggcttcacacatacacagagacatcc
ttctgcaaaatgctggtcagcaagcaggctctagtgacgaaacacgtcgaagctctttct
cagggtgacctcagtcccgcccaggtcctagaggcttgtcactatgtttacgaagcaagt
ttcacatgcgctgatgggaacagaggccgtggcagcacacggttggttgctcacctggca
gcgaatcttccagaagtcctgtcatttcatggcgttccactcaacccgccggatgtgttc
actgtgcagaaagtactagagaggggtggaaatgaaggtcgaagcttttgcttggatctg
gaagattctggaattcgggtttctggactgaaggcactagtggggctcaacaacatcaac
acatacagagcgtgcattgctgatgtcatcaccctatgggagcagctagagcagagtggt
gaggaggggctcctacggggggccgtgtccaagttcaagatccatcctctgaaggtcaca
caggtgtgtcatgcagagcacctggcaaagctggtgaacatacatatgcacaagaggcta
tcagacagtagttgcacccaatcagattccatctgggcagagggagtgcccgctgtcaag
gaacttcacaaactcgagtttgagcttggcccagagaaaggggccttgtatcttcccaag
ctgtgggagctcctgccaggtctgcataacctacagcacttagatctggagaacagtaag
atcagagacacaggatcagagaaattagctgacgctttagcctcactctgttccctggag
attctgaatctgtcacagaattgtataggagaccatggggtgaagaaactggccaccaag
ctgaggtatctgcccaaactgcactgtttaagtctctacagtaatgtcatttcggatgaa
ggggcagagagtttagcagctgtcctcccacacatggtgtctctcactgacttggatgtg
aagtataacaagctgacagatgtcggagcacagagcctcggagccagtctgagaaactgt
caaaaaataaagactttacggatgtggaaccagtgtatcccgtacggagtgtttgagcgt
cttcagctgcaagacagtcgcatcctttggcattaa
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