Scophthalmus maximus (turbot): 118289495
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Entry
118289495 CDS
T09850
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118289495 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118289495 (ddx5)
03009 Ribosome biogenesis [BR:
smau03009
]
118289495 (ddx5)
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118289495 (ddx5)
Spliceosome [BR:
smau03041
]
Complex A
U1 snRNP components
U1 related factors
118289495 (ddx5)
Complex B
118289495 (ddx5)
Ribosome biogenesis [BR:
smau03009
]
Eukaryotic type
Pre-60S particles
Helicases
118289495 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118289495
NCBI-ProteinID:
XP_035472443
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All DBs
Position
17:5812637..5818529
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AA seq
623 aa
AA seq
DB search
MPGFSDRDRGRDRDRDRGYGGGPPRFGGNRGGGGGGGGGKFGNPGERLRKKHWNLDELPK
FEKNFYQQHPDVTRRPPQDVELYRRTKIITVKGRECPNPIAKFHEASFPSYVMDVINKQG
WTDPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRR
CDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV
INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLLQ
MGEDRGGRSRGGRGGDFDRRDRYSSGRRDFGGFRDRDNSRGFDNGPNKSFGTNVQNGGYG
GNNGSGNGFSGGGFNGNGQSNFGSNQTGAFGGQTNFQAQQFAPKAAPQNGAGHPPFPFPQ
AQAPQQQHPPPLVPYPMPPQFTQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgccaggattttccgacagagaccgcggcagggacagagatagagacagaggctatggc
ggtggccctcctcgcttcggaggcaaccgcgggggcggaggcggcggcggaggaggaaag
ttcggcaatcccggcgaaaggctgcggaaaaaacactggaacctcgacgaactcccaaag
tttgagaagaacttttaccagcagcaccccgatgtcacccggagaccaccgcaagacgtt
gaactgtacagaagaaccaaaataatcacagtgaaggggagagagtgcccaaatcccatt
gcaaagttccacgaggccagctttccatcttatgtgatggatgtgatcaacaaacagggt
tggacggatcccacacccatccaggctcagggatggcccctggctctcagtggcaaggac
atggtcggcattgcgcagactggctctggcaaaactctctcttacctgttgcctgcaatt
gtccacatcaaccaccagcctttcctggagcgtggagatggtcccatctgtttggtgctg
gccccgacccgtgagctggcccagcaggtgcaacaggtggctgcagaatacggcagagct
tctcgcctcaagtccacctgtatctacggaggagcacccaagggtcctcagatccgtgac
ttggaaagaggtgtggagatctgcatcgccaccccaggcaggctcatcgacttcctggag
gcaggaaagacaaacctccgtcgatgcacatatctcgtgctggacgaggccgacagaatg
ctggacatgggctttgaaccacagatccggaaaatcgtcgaccaaatcagacctgaccgg
cagactctgatgtggagtgccacgtggccaaaagaggttcgtcagctggcagaagacttc
ctgaaggaatatgtccagatcaacgttggggcactgcagctcagtgctaaccacaacatc
ctgcagatagtagatgtctgcaacgatggagagaaggagaacaaactgatccgtctgctt
gaagaaatcatgagtgagaaagagaacaagaccatcatctttgtagagacaaagaggcgg
tgtgatgacctcaccaggaggatgagaagggatgggtggccagctatgggaattcatggt
gataagagccaacaagagagagactgggttctcaatgagttcaaatatggaaaggctcca
attctcatcgctacagatgttgcctccagaggtctagatgtggaagatgtcaaatttgtc
atcaactttgactaccccaacaactcagaggactatatccaccgcattggccgaacagct
cgtagccaaaagacaggcacggcttataccttcttcactccgaacaacatgaggcaggcc
agcgacctcatctctgtgcttcgggaggccaaccaggcgatcaaccccaagctcctccag
atgggagaagacagaggaggtcgttcaaggggaggcagaggtggtgatttcgaccgtcgg
gataggtattcctctggaaggcgtgattttggtggttttagggacagggataacagtaga
gggtttgacaacggaccaaataaatcctttggcacaaatgtacaaaatggaggctatggg
ggcaataacggcagcggtaatggcttcagcggaggtggcttcaatggtaatggacagagc
aactttggtagtaaccaaacgggcgcctttggaggccagaccaacttccaggcccagcag
tttgccccaaaggctgccccacagaacggcgcaggtcacccccctttccccttcccccag
gcacaggctcctcagcagcagcatcctcctccgctggtgccctaccccatgcctcctcag
ttcactcagtaa
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