Scophthalmus maximus (turbot): 118289972
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Entry
118289972 CDS
T09850
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118289972 (taf1b)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
118289972 (taf1b)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
118289972
NCBI-ProteinID:
XP_035473144
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Position
18:complement(20121149..20129139)
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AA seq
730 aa
AA seq
DB search
MVTGCDRGRPPDLDCVFHNKVPNIRTTRLIQNSSQRIRTRKTELRQARHHRATRDGSGCF
HVHHDAVVLLSACERRQSATGPSLHRKPQKKRKQLPSRADEQRMKPSPFSSDANMDDEHT
AGFREPCSLCSAVDWGISDEGRFYCKSCHNVIERTREVVDPTVIPGSSRISSISRGRRRR
RESLRQWMICEAFQFILRNQANALLRLGVSAHFKDQVLCPLWRRYLQSSRQAYTSRPVRS
ATFKVHRPDLASDSVAETSASETDVSSIGGSVADSGSDWSRCSGSLDGASYLTAPLRKTR
LMSMTKTLALVHVALVWSREPLTLSDLLRLVSEGLVPYTNAYEELPEEMKLEGQDVVIFK
VESVPAHQALHREAQTLVQQLQLQAFPPISRQSLLHPALLSLRYLTDANLPDELHPWLCR
LMDCAGLVDETLHTFDPVSCPELPLYDVQAAALIVITMKLIFGMDDHTEWDLSNEAGVLD
DAENVFHLRRWFRLTQAALTRAQQTRRRHIARKQWKVKKPLCRSRKVKSVVMKGKSKSLR
SRAGISPTVTSQLSVSSGDVCVSAGTAEQVQMCFEKLSCRPAGVQHCDVSSFRFCWGDKD
GADGPSLHHQRLDGALTLKHNVLTPSNSTYWHPVLRRCDPQKCGSHYSEVEATLPRSFVW
LLQLFCFLLDVEPAHLYEEVLKLERRVLTGRTARSKRPRRTERTRESTTKTGTRSDTRKP
QGRQETRGTR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccggctgtgaccggggacgaccaccggacctcgactgcgtctttcacaacaaa
gtcccgaacatcagaaccacgagactcattcaaaactcttcacaacgaatcagaaccagg
aagacggagctgcgtcaagcgcgacaccaccgagccacacgggacggaagtggatgtttt
catgttcatcacgacgctgtagttctcctctcggcctgcgagcggcggcagagcgctacg
ggtccgtcactccaccggaaaccgcagaagaagagaaagcagcttccgtcgcgtgcggac
gagcagcggatgaaaccttcgccgttttcttctgacgcgaacatggacgacgagcacacg
gctggcttcagggagccctgctctctgtgctcggcggtcgattggggaatttcagacgag
ggtcgtttctactgcaaatcctgccacaacgtcatcgagagaaccagagaggtggtggac
cccaccgtcatccccggctcgtccaggatctccagcatcagcagaggaagacgacggaga
cgagagtctctccgtcagtggatgatctgcgaggcgttccagttcatcctgaggaaccag
gccaacgctctgctgcgcctgggagtctccgcccacttcaaggaccaggtgttgtgtcct
ctgtggagacgttacctgcagagcagtcgacaggcgtacaccagccgcccggtgaggagc
gccacctttaaagtgcaccgtccggacttggcctcggacagtgtggccgagacgtcggcc
agcgagacggacgtgtccagcatcggcgggtctgtcgcagacagcggcagcgactggtcg
aggtgctcgggctcactggacggtgcctcgtacctgacggcgccgctgaggaagactcgt
ctgatgagcatgacgaagacgctggctctggtccacgtggctctggtctggagccgcgag
ccgctgacgctcagcgacctgctcaggttggtgagcgaaggcctggtcccgtacacgaac
gcctacgaggaacttcccgaggagatgaagctagaaggccaagacgtcgtcatcttcaaa
gttgagagcgtcccggcccatcaggccttgcaccgcgaggctcagactctggttcagcag
ctgcagcttcaggcttttcctccaatcagccgacagagtctgttgcacccggcgctgctc
agcctgcgctacctgacggacgccaacctgcccgacgagctccacccgtggctctgcagg
ctgatggactgtgccggtttggtggatgaaacgctccacacgttcgaccccgtctcttgt
cccgagctgccgctgtacgacgtccaggccgccgccctcatcgtcattaccatgaagctc
atcttcggcatggacgaccacacagagtgggatttatccaacgaggccggtgtccttgac
gacgcagaaaacgtgtttcacctgcggaggtggttcagactgacgcaggctgctctgacc
agagctcagcagacgagacgccgacacatcgccaggaaacagtggaaggtgaagaaaccg
ctctgccgcagcaggaaggtgaaaagtgttgtgatgaaagggaaaagtaagagtctgagg
agccgagctgggatcagtccaactgtgacatcacagttgagtgtgagcagcggtgatgtt
tgtgtctctgcagggacggcggagcaggtccagatgtgtttcgagaagctgtcctgtcgc
ccggccggcgtccagcactgcgatgtgtccagcttcaggttctgttggggggacaaggac
ggagcagacggtcccagtctgcaccaccagaggctggacggcgccttgacgctgaaacac
aacgtcctgactccctccaactccacgtactggcacccggtgctgcgacgctgcgacccc
cagaagtgcgggagtcattactcggaggtggaggcgacgctgcctcggtcgttcgtctgg
ctgctgcagctcttctgcttcctgctggacgtggagccggcgcacctgtacgaggaggtg
ctgaagctggagcgccgagtcctcaccggcagaaccgcccggagcaaacgcccgaggagg
acggagaggacgagggagtcgaccacgaagaccgggaccaggtctgacaccagaaagcca
cagggtcgacaagaaaccagaggaacgagatga
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