Scophthalmus maximus (turbot): 118290042
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Entry
118290042 CDS
T09850
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118290042 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118290042 (hbs1l)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118290042 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
118290042
NCBI-ProteinID:
XP_035473259
UniProt:
A0A8D3AF72
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Position
18:10198112..10217362
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AA seq
687 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDMYGQSVDDDYCCISPATANQFIYSRQERQAPKEEPLEEEE
DEDVHMSPTINHNLDPLDQAKLFSCLDHMRAVLGEALPDSVLSQAAIRHGFDPQRALDAV
LSEEANTAPVKRSTTEEAALVAGVSQDKAPLPQRTKQEAVAEKAKSRDEPHNKLDSEVVP
KVARMTVSGKKQTMGFAVPSAGENGVVTAPAAEATPKRPETPSKGPNGDEPATVPTPGRP
SAKSRQAINVKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETTSKVVTLMDAPGHKDFIPNMIT
GAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWHQER
FQEIISKLGHFLKQAGFKDSDVFYIPTSGLSGENLATRSSVSQLTVWFSGPSLLEQIDAL
KAPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRIQAMPPNETCTVKGITLH
DEALDWAAAGDHVSLTVTGIDIIKINVGCVFCDPKVPIQACTRFRARILLFNIEVPITQG
FPVLLHYQTVSEPATIRKLISILHKSSGEVLKKKPKCLSKGMNAIVEVQTQRPVSLELYK
DYKELGRFMLRYVGSTIAAGVVTEIKK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgtccgaggttacaactacgacgaagactttgacgatgatgac
atgtacggacagtcggtggatgatgactactgctgcatatcaccagcaacagcgaatcag
ttcatctactctcgtcaagagaggcaagcaccaaaggaggagcctttagaagaggaagaa
gatgaagatgtccacatgtcccctaccatcaaccacaaccttgaccctcttgatcaagcc
aagctcttttcatgtctggaccatatgcgggcagtgctgggagaagcactaccagactca
gtcctgagccaggcagccattagacatggatttgacccacagagggcactggatgcagtc
ctgtctgaagaagctaatacagccccagttaaaagaagtaccactgaggaggcagctttg
gtagcaggagtttcccaggataaagcgccgcttccacaaagaaccaaacaagaggctgtg
gctgagaaagctaaaagcagagatgagcctcacaacaaactggactctgaagtggttccc
aaagtggctcgcatgaccgtctctggcaagaagcagaccatgggcttcgctgttcccagt
gcaggggagaatggcgtcgtcactgcacctgccgcggaggccacccccaaacgtccagag
accccgtcgaaagggccaaatggagacgagcccgccacagttcccaccccaggccgcccc
tctgcaaagtcccgccaagcgatcaatgtcaaggctgagctggagaagagacaggggggc
aagcctctgctaaatttggtggttataggtcatgtggatgcaggtaaaagcacgctgatg
ggtcacctgctttatctgctgggcaacgtcaacaaacgtaccatgcacaagtatgagcag
gagtcgaagaaggcagggaaagcctctttcgcctacgcttgggttctggatgaaactggc
gaggagagggacagaggtgtgacaatggatgttggcatgaccaagtttgagacgacctct
aaggtggtgaccctgatggatgcacctggacacaaagacttcatccccaacatgatcaca
ggagctgcacaggctgacgtggcggtgcttgtggtggatgccagcagaggagagtttgag
gctggcttcgaggcgggtggtcagaccagagaacatgccctgctggtgcgttcgctgggc
gtcactcagctggctgtcgcagtcaacaagatggaccaggtaaactggcaccaagagcgt
ttccaagaaatcatctccaaacttggccattttctcaagcaggcaggattcaaggactct
gatgttttctacatccccaccagcggcctgtcgggagaaaaccttgctaccaggagttcg
gtttcacagctcaccgtctggttctccggtcccagcctgctggagcagattgatgccttg
aaagctcctcagaggtcaatagacaagcccttcagactgtgcgtctcggatgtgttcaaa
gaccagggttcaggcttctgtgttacggggaagatcgaggcaggttacattcagactggg
gacaggatacaggcgatgcctcctaatgaaacctgcactgtgaaaggaatcactctacat
gacgaggctctggactgggctgcagcaggagaccatgtcagcctgaccgttaccggcatt
gacatcatcaagatcaacgtgggttgtgttttctgtgacccgaaagtgccaattcaagcc
tgcactcgattcagagcccgaatcctcctcttcaatatcgaggtccctatcacacaaggc
ttcccagtattgttgcattaccagacggtcagtgagccagccactatcaggaaactgatt
agcattctacacaagagcagcggtgaagtcctcaagaagaagccaaagtgtttgagtaaa
ggtatgaatgccatcgtggaggtccagacccagcggccggtgtcgttggagctgtacaag
gactacaaggagctcggccgcttcatgctgcgatatgtgggctccaccatcgctgcagga
gttgtcactgagatcaaaaagtga
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