Scophthalmus maximus (turbot): 118290333
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Entry
118290333 CDS
T09850
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03008
Ribosome biogenesis in eukaryotes
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118290333 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
118290333 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118290333 (xrn2)
03019 Messenger RNA biogenesis [BR:
smau03019
]
118290333 (xrn2)
03009 Ribosome biogenesis [BR:
smau03009
]
118290333 (xrn2)
03016 Transfer RNA biogenesis [BR:
smau03016
]
118290333 (xrn2)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118290333 (xrn2)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
118290333 (xrn2)
Ribosome biogenesis [BR:
smau03009
]
Eukaryotic type
Pre-60S particles
RNases
118290333 (xrn2)
Transfer RNA biogenesis [BR:
smau03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118290333 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
NeA_P2
Motif
Other DBs
NCBI-GeneID:
118290333
NCBI-ProteinID:
XP_035473821
LinkDB
All DBs
Position
18:complement(19233680..19257224)
Genome browser
AA seq
979 aa
AA seq
DB search
MGVPAFFRWLSRKYASIIVHCVEEKGKQCNGVRIPVDTTKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKQRMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RLSNDPGWKNVTVLLSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQMGHEIKDCQGTAREKQGQHDEFADTMPTSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGYVNLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KRKRMKAEKQRGPAYLTGGQFAPQALGRRDRPEPVQNARHQAFDMRMQGNKDAAQSLKAT
MKNGGNSSAGPSDGADGRGVKRKAEDSDSEPEPEDVVRLWEDGWKQRYYKTKFDVDVSDE
DFRRKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFTDFETDTKPF
KPLEQLMGVFPAASGNFLPPTWRNLMSSPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALSDVYPELSPEEEKRNSLGSDVLFLSRSHPLFDFIHELYRTESHEDTDIPA
ELCHGILGTLNLDDNPILPDKSVPSPIPVLRDISQNSAIGVKFRDPQFADGFVFKAVLLS
GAKMPNKVLKPGDWEKGNREPWRPQLGFNPNRHQAHLDQSGFRALGHSMNRNQHGGGQYS
SAPPPNSYQRGNYRSPHGSGHQPFQHSRQNSLLGTPPSFQQQQQYPRQQQQYGGGGGGGG
GHGWDRAMQSQQSSYQQNANRGRGGGGGGGGYQQRYDQRRDDWQDRRDDRRDNRGQQHQG
RGSFPPPPPPPPSRRYEWN
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagccgaaagtatgcgtcaatcattgtgcac
tgcgtggaggagaaggggaaacagtgtaacggagtccgtattcctgtggacacgaccaag
ccgaaccccaacgacgtggagtttgacaacttgtacttggacatgaacgggatcattcac
ccgtgtacacatccggaggacaaacctgctcccaaaaacgaagacgagatgatggtcgcc
atctttgagtacatcgaccgcctgttcaacatcgtgcggcccaggagggttttgtacatg
gccatcgacggagtggctccgcgcgccaaaatgaaccagcagcgctctcgtcggttccgt
gcctccaaagagggcgtggagctgacagaggagaagcagcgcatgagggaggaggtcatc
cagagaggcggttatcttcctccagaggagattaaggagagatttgacagcaactgcatc
actccaggaacagagttcatggacaacctggcacaatgtcttcgatactacgtcgcagaa
agactcagcaacgatccgggatggaagaacgtcaccgttttgttgtctgacgcgagtgtt
cccggtgaaggtgaacacaagatcatggactacatccggagacagagagctcaacccaac
cacgacccgaacacacaccactgcctgtgtggagccgacgccgacctgatcatgcttggc
cttgcgactcacgagccgaacttcaccatcatcagggaggagttcaagcccaacaagccc
cgaccctgcgcgctctgcaaccagatgggccacgagatcaaagactgtcaggggacggcc
cgagagaaacagggacaacatgacgaattcgcagacacgatgccgacgtctgagcaggag
ttcatcttcatccgactgtgtgtgctgcgggagtacttggccagagagctcaccatggcc
agtctgccgtttcccttcgacttcgagaggagcgttgacgactgggtcttcatgtgcttc
ttcgtcgggaacgacttcctccctcacctgccgtctttggagatcagagagggagccatc
gaccgtctagtcaacatctacaaagacgtcgtgcacaaaaccggaggctacctgacagag
aacggctacgtcaacctggagcgggtggagttgatcatgcaggccgtgggcgtggccgag
gacaacatcttcaagaagcgtaaagaggacgatgaaggcttcaagaggaggatgaaagag
aaacgaaagaggatgaaggcagagaagcagcgaggccccgcctacctgaccggcgggcag
ttcgccccgcaggccctgggtcgacgggaccgacccgagcccgtccagaacgctcggcac
caggccttcgacatgcggatgcagggcaacaaggacgcggctcagtctctgaaggccacg
atgaaaaacggaggcaactcgtctgcaggacccagcgacggtgctgacggtcggggcgtg
aagaggaaagccgaggacagcgacagcgagccggagcccgaagacgtcgtcaggctgtgg
gaggacggctggaagcagagatactacaagaccaagttcgacgtggatgtgtcagacgaa
gacttcaggaggaaggtggtgaagtcgtacgtggagggtctgtgctgggtgctgcgctac
tactaccagggctgtgcctcctggaagtggtacttcccgttccactacgctcctttcgcc
tctgactttaaagatattaaggaaatgttcaccgacttcgagacagacaccaaaccgttc
aagcccctggagcagctgatgggagtgtttcctgccgccagcggcaacttcctgcctcca
acatggaggaacctcatgtccagtccagaatcttctatcatcgacttctaccccgacgac
ttcgccatcgacctcaacggcaagaagtacgcctggcaaggtgtggccttgttgccgttt
gtggatgagcgtcggttgcgggcggctctgtcagacgtctacccggaactctcgcccgag
gaagagaaaagaaacagtctgggaagcgacgtcctgttcctcagtagatctcacccgctc
ttcgacttcatccacgaactttaccgcacagaatctcacgaggacacagacatcccggcc
gagctctgccatggaatcctcgggacattaaatctggatgacaacccaattctaccagac
aaatcggtgccatcgcccatcccggtgctgagggacatttcacagaacagtgcgatcgga
gtgaagttcagggatccacagtttgcagatggttttgtgttcaaggctgttctgctgtct
ggagccaagatgcccaacaaggtgctgaaaccaggcgactgggagaaggggaaccgggag
ccctggaggcctcagctgggcttcaaccccaacaggcaccaggctcatctggaccagtcc
ggcttcagggccctgggtcacagtatgaacaggaaccaacatggcggaggacagtacagc
agcgcaccgccgcccaacagctaccagagaggaaactaccgttctccacacggcagcggc
caccagccgttccaacattccaggcagaacagtttgttgggaacgccgccctccttccag
cagcagcagcagtatcccaggcagcagcagcagtacggaggaggaggagggggagggggg
ggtcacggctgggatcgggccatgcagtcgcagcagtcgtcgtaccagcagaacgccaac
cgtgggcggggcggaggtggaggcggcggcggctaccagcagcgctacgaccagcgcaga
gacgactggcaggatcgccgggacgatcgccgggacaaccgggggcaacagcatcagggc
cgaggctccttcccccctcctcctccccctcccccctccaggagatacgagtggaactag
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