Scophthalmus maximus (turbot): 118290673
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Entry
118290673 CDS
T09850
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X2
KO
K16498
protocadherin delta 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118290673 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smau01009
]
118290673 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smau04515
]
118290673 (pcdh7b)
Protein phosphatases and associated proteins [BR:
smau01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118290673 (pcdh7b)
Cell adhesion molecules [BR:
smau04515
]
Cadherins
Protocadherins
118290673 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
LYRIC
Adeno_E3_CR2
DUF1180
Motif
Other DBs
NCBI-GeneID:
118290673
NCBI-ProteinID:
XP_035474378
LinkDB
All DBs
Position
12:complement(5269532..5371312)
Genome browser
AA seq
1246 aa
AA seq
DB search
MRTTGAVDYLYYCLLILQLVNQPAAKQVLRYRLAEEGPADVRVGNVAADLGIVAVSGEVT
FTLESGSDFFKIDNITGELSTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSSVLSLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
NGESSRRLSSSADSYSGKRRFDEGASRSSVFELQVADTTDGEKQPQLIIKGALDREQRDS
YELTLRVRDGGDPPRSSQAILRVMITDVNDNNPRFEKSVYEADLPENSSPGAPILQLKAA
DADVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMARDRGQP
PKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGIANVAEDVVVDTPIALVQVSDRDQG
ENGIVTCTVVGDVPFQLKPASEMEGEQNKKKYFLHTSATLDYEATQEYNVVIVAVDSGSP
SLASNNSVIVKVGDTNDNPPIFSQNVVEVSFPENNAPGERVTTVVAIDADSGKNAEIAYS
LDSSVNGIFSIDADSGDIRVNTILDREQTERYEFKVIARDKGINTLQGSATVVVLVADKN
DNDPKFMQDVFTFYVKENLEPNSPVGMVTVIDADKGQNAEMSLFIEEEEEIFSIENDTGT
IFSTLSFDREQKTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPMVTFPINSSYTLL
PPSSNIRTVVRTVIATDTDTGVNADLNYSIIGGNPFRLFEIDGGSGVISLVGKLEQKHYG
LHRLVVQVTDRGPPSQSTTTLVHVFVNETLSNSTVVEAQVAKSLSTSLNTNIAGDPNYDL
SKQRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKSKK
PKKDKKKQKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPCMGRYRSVNGGPGSPDLA
RHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSSQTIN
KYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLDESETPSSKSSSGPRLGALPLPEDS
YERTTPDGSVDSRPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPSKSTTTPQQPK
LSTFMSGSSSSSSSEQPGSQETLAMAAMANGDPTSTHMMGDRNRNLLNKKMASSSSSYEA
FGSPSYGSPGGGEEVLGHPTEEIPLAPTGEYKPTSCGTLTRREVYL
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggtgcagtggactatttgtactattgcttgctcatcctgcagcttgtg
aatcagcccgctgccaagcaagtgctccggtaccgtttggccgaggagggacccgccgat
gtcagagtaggaaacgttgccgccgacctgggcattgtcgccgtgtctggcgaggtgaca
ttcaccctcgaatcaggctcggattttttcaaaatagataacatcacaggggagctcagc
accaacgagaggcggatagaccgtgaaaaattacagcagtgccaaatgatatttgatgaa
aatgagtgttttatagatttcgaggtgtcagtcatcggaccagcccagagctgggtcgac
ctgtttgagggaaaagtcatcatactagacataaatgataacaccccgtccttcccgtcc
tctgtcctgtcactgtctgtggaggaaaacagacccattggaaccctttatctgctgccc
accgccacagacagagattttggcaggaatggaatagagagatacgagctgatccaggac
aatggggagagctcaaggcgcctgagctcttcagcggattcatactcggggaagaggagg
tttgacgaaggcgcgagcaggagcagcgtctttgaactgcaagtcgccgacactactgat
ggagagaagcagccccagctcattattaaaggggcccttgatagggaacagagagactcc
tatgagctcacactgcgtgttagggatggaggagatccccctcgctcctcccaggccatt
ctcagggtgatgatcaccgatgtgaatgacaacaaccctcggtttgagaagagtgtgtat
gaagctgacctgccagaaaacagctccccgggtgcccccatactccagctcaaagcggcc
gatgcagacgtgggggttaacggtcaaatagaatatgtgtttggagcagccacagagtca
gtgaggaggctgctgcggttggatgagagcacagggtggctgagtgtcttgcaccgcatt
gaccgtgaagaagtgagccaactgaggttcacggtaatggcccgtgaccgaggccagcca
cccaaaatggacaaggcgactgtggtgttgaacattaaggatgaaaatgacaacgttccc
gctattgagatacggaagattggacgcattttcctaaaagatggtatagccaatgtggct
gaggatgtggtggtggacacacccattgccttagttcaggtgtcagaccgtgaccagggg
gaaaatggcatagtgacctgcacagtggtaggggatgtgccctttcagctgaaaccagcc
agtgaaatggagggtgagcagaataaaaagaaatatttcctccacacgtctgcaacgctg
gactatgaggccacacaggaatacaacgtggttatagtggctgtggactccgggagcccc
agtctggcaagtaataactctgttatcgtcaaagttggcgacactaatgacaaccctcct
atctttagccagaatgtagtcgaggtgtcatttccggaaaacaatgcccctggcgagagg
gtgacaacagtggtggccattgacgcagatagtgggaagaatgctgaaatagcctattcc
cttgactcatcagtgaatgggattttctccatcgatgcagacagtggagacatccgagta
aacaccatcctggacagagagcaaacagagcgctacgaattcaaagtgatagccagagat
aagggcataaacactcttcaggggtctgcaacagtggtcgtccttgtggccgataagaat
gacaatgacccaaagttcatgcaggacgtgttcaccttctacgtcaaagagaaccttgag
ccaaacagccctgttggtatggttacagtcattgatgcagataaaggtcaaaatgcagag
atgagtcttttcattgaagaagaggaggagatcttttctattgagaatgacactgggact
attttctccaccctgtcctttgaccgagagcagaaaactacatacactttccgtgtcaaa
gctgtggatggtggcgaccctcccagatctgccactgccacagtctcactctttgtcatg
gatgagaacgacaatgcaccaatggtcactttcccaattaacagctcctacacccttctt
cctccctccagtaacatcagaacagtggtcagaactgtcatagccaccgacactgacacc
ggcgtcaacgcagacctgaactacagcatcattggggggaaccccttcaggctgtttgag
attgatggcggctctggggttatttcactggtggggaagctggagcagaagcattatggc
ctccacagactcgtggtccaggtgaccgacagagggccgccttcacagagcaccaccacg
ctggttcatgtgtttgttaatgagactctttccaattccacagtggtggaggcccaggtg
gctaagagcctgagcacgtctctcaacaccaacattgccggcgaccccaactatgatcta
agcaaacagcggttaagcatcgtaatcggagtagtttcaggcatcatgacagtcatcctc
attattcttgttgtagtcatggcccgttactgccgtcccaaaaataagaatggctacgag
gccggcaagaaggatcacgaagacttctttaccccacagcagcatgacaaatccaagaag
cccaagaaagataagaagaaacagaaatctaaacagccgctctacagcagtattgtcact
gtcgaggcctccaaacccaacgggcagcgctatgacggcgtcaacgagaagctgtccgac
agtccttgcatgggccgctaccgttcagtcaacggagggccagggagcccggatttggcc
cgacactacaagtccagttcgcccctccccactgtccagcttcacccgcagtcgccaaca
gctggaaaaaagcaccaggccgttcaggacctgccccctgccaatacctttgttggcacc
ggagataacatttcccttggatctgaccactgctctgaatacagcagtcagactatcaac
aagtacaacaaacagccgtttcgccgagtgaccttctcggtggtgagccagccccaggac
cctcaccagcagggatcgctgcagagctgctacgacagcggcctggacgagtcggagacg
cccagcagcaagagctcatcgggcccccggctgggcgcccttcccctgcccgaggacagc
tacgagaggacaacgccggatggcagtgtcgactcccggcccttgcctgacgtagccatg
actggcaagtgcactcgggaatgcgacgagtacggccactcggactcctgctggatgcct
gtgcgcacgtcgcccgagcgacggccatccaagtccaccaccaccccccaacaaccaaag
ctttccacttttatgagcggcagcagcagcagcagcagctccgagcagcccggcagccaa
gagaccctcgccatggccgccatggccaacggagaccccacctccactcacatgatgggc
gaccgcaatcgcaacctgctcaacaagaagatggcctcctcctcctcctcctacgaggcc
ttcggctcgccctcctacggctcgccaggaggtggggaggaggtgctgggccaccccact
gaggagatccccctggcccctactggggagtacaagcccacgtcctgtggcactctgacg
cggcgggaggtgtacctgtga
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