Scophthalmus maximus (turbot): 118291397
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Entry
118291397 CDS
T09850
Symbol
lama1
Name
(RefSeq) laminin subunit alpha-1 isoform X1
KO
K05637
laminin, alpha 1/2
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118291397 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118291397 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118291397 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_II
Laminin_I
Laminin_G_3
F5_F8_type_C
DUF1411
Crystallin
Transcrip_act
Motif
Other DBs
NCBI-GeneID:
118291397
NCBI-ProteinID:
XP_035475535
EnsemblRapid:
ENSSMAG00025013031
LinkDB
All DBs
Position
21:complement(15991204..16014943)
Genome browser
AA seq
3072 aa
AA seq
DB search
MKLLVLLLLMEQTAAQQRGLFPAILNLASNAMISSNATCGDPEPEVYCKLVEHVPGRTIK
NPHCPKCDANSVLSKERHPITNAIDGTNQWWQSPSIKNGQQFHWITITLDLKQIFQVAYI
IIKAANSPRPGNWILERSLDGVNFDPWQFYAISDSECLTRYNITPRLGPPTYKRDREVIC
TSYYSRLNPLEHGEIHTSLINGRPSADDLTSDLLNFTSARYIRLRLQRIRTLNADLMTLS
AHDPRDIDPIVTRRYYYSIKDVSVGGMCICYGHAKSCPLDTVTKKLQCVCEHNTCGENCN
KCCPGYHQEPWQPGTISEGNTCEKCNCHNKAVDCFYNQTVSELLLSLNSGGVRRGGGVCI
NCQQNTAGINCETCRDGHYRPAEVSPYSDSPCVGCRCDVRGSTSSVCARDDTQPGQCVCH
QGFAGRQCDRCAFGYRDFPHCVRCECDLSGSINTDPCSPCTCKVNVMGAHCDLCKPGFYN
LQEKNPLGCTNCFCFGVSDVCESSTWSTAQVFHGDAWLHPSQSHHIPTAVHSNDLILPGN
TSSGHIHQLVLSWAAPASFLGNKLMSFGGYLNYDVVYDIPLDNEDHSLPAHSDIIIEGNG
RALRLSPLLVLLLSPLAERSVALAMIPQRFVDDQTGDHVTRDDLLSVLAGMTSLRVRVHL
NASADGPIRLSRVSLDVGNSQSVSGIQAVAVETCECPWGYSGTSCETCLPGFYRVGGVLF
GGNCLQCECNDHATECDVNGVCLGCTHNTTGSHCDQCLPGFYGDATEGTPSDCRMCPCPL
TEPSNSFSPTCVLEVSGQVSCDQCQGGYTGANCERCASGYYGNPQVVGGACVRCECNGNV
DVSEVGHCDDITGDCLRCLGNTAGSHCEVCQPGYYGDALHTKDCRECGCDVSGAPSSACD
VTTGQCSCRENVTGRTCDRCQSGFFGLQSGRGCSACNCQSGSSSESCDEDGRCQCVVGVG
GDKCDHCSRGYYGFHGIGCTACTCYHTGGNCDPENGECVCPAHTEGDNCDRCEAGYWGHN
LTTGCKSCSCSAEGSSTPQCDVTNGQCQCSEGFAGRSCDQCAPGYHGYPACSACGCDTSG
TEDRFCNRTLGVCDCRHTGECVCKVGVSGRRCEECVSGWFGLSAMNPYGCSQCFCSGLSR
DCEEKGGLTRVPITLARSPALLSLVTQSNLQGVVTGVYQQDGDVLLDTRQLNISRLTGPF
YWRLPPQFQGSQLLSYGGLLSYIITFYAEDGLGLSNQEPQVLMRGGILRKFVIYTDMVAP
GNGVMTPHEIRMTEHKWKYFNSVSEKAVSHDDFMSVLSNVQYVIIKASYGTRLQQSRISN
ITMETAVEAKLEQEPGVTGEVVRLIESCNCPPGHTGLSCQECAAGYFHRPQSELSSQSQK
LMFVHPCVRCRCNNHSEICDTETGDCQDCQHHTAGRSCEFCAPGHYGNVSGSTSDCSLCA
CPLRDNSFSPTCASEGALGDFRCNACQTGYEGRYCERCSVGYYGNPSMPGGRCSRCNCSR
WGSPRSLCDALTGQCECKAGVKGQSCDQCDDRHVLQGEECVSCDDECTGVLLDDLDQLHN
NFFSVNVSGVTMAPYRQLVVLKNQTGNIKSLLSEKRSVTLHLSRVEEDLNHLTSDLSALL
KQVTRVSDDLQEVGVSTNISLSQGALLLESISNLLDNIQVLQREAGHLNQTTEEEPESAN
QTHLLEALEFMLDTMRAVNLTAANNSANQELSLSQSLVHSLKVDFLSSRTLVDNRLRPLV
ASLTVNMEMLKNAHVHLNNAAQQNTQTHSRLNITHSVLQQYQSVHQDLTSECLSVDGRLD
NSQLLLDDSVSLMDELTNTTTQVELLAGQLDQWRPLLRKQVDSLVVGLKMTDALENVYRA
ESHAHQLQSHAHSLHSFLSSVCNVSQNSSRLVQIDSDITKRVDSAQQVALIAHFSASLAL
NMTVQSVQLLSEEGGAKQNISSAVLQRSRQINKTAEDLQLNVSMVTSRLGRVKESVLNSS
FLILQPIRELQSISNGSTMSLQQAQLQAAAAHSGLQVALKQLQRLEDQLQDSSSVVENTI
HTVRETNRLVTHTHAAANEAQRKLQEAEHHTERLMERIKPLSILGETLSRNLSDIRELID
QARRQAASIKVAVQADGDCVRSYKPQIQSSNFNTVSLILKTTSRQNLLFYLGSNITVDYL
AIEMHDGKASLVWDLGSGSNRLEFPGLDITNNRWTRVNATRFGAQVSLSVHQLESETAQL
PAVTALSPGSSRVLDINKNTVMHIGGLGAHIQSPAALRSYTFQGCLGEVLLNERNIGLWN
YDSREGECGGCFSSPQAEETSFHFDGSGFSLVQKSLRATSTSIVLLFKTLSPGGLLLYLA
SNNTRDFLSIELVEGHVRLTFDLGSGVLTLTSNRKYNTGVWYKITLQRNKRKGYLSIMAA
DQSSEKEVLEAESPGIASDLNRSDLDPIYIGGLPASRPIRRQVVSRSYVGCIKNVEIARS
NFDLLRDAYGVRKGCVLKAVRSVSVLSGGFVQIIPPSFGQEVELLFSFSSNNQSGILLAA
FSEGRSHRQHFLSAHLVSGALETELGEVGGATRRVMVMKSDRGSFGDGEKHSVIITINRK
SLSVQVDEDHLKSVPLLPGGLSRLSPASFFIGGLPSGEESHLPIRLQDLARGFRGCIQHL
VVGRALVDLSGAVRYEGVELDSCLLEARVVAVLPDDQDIEPTPDPTHLSVATPTHLSAWT
PGALACVSEAEPTFLPSAAQFGSSKHSHMTFIINPNTFKKSVSVRLSVRSRASDGLILLL
SDSKHMDFILLRLTGGRLMMSADLGKGPASISSSVAINDGDWHSVSAEVSRRLVTLSVDS
SNPDSVTVKGNQLDVDDTLYLGGLPHTHATRRINVSSSLPGCVHSVSLNGAMLDLTKPVS
QHNVTSCFTKDQTGSYFNGSGYTVLMHDGYKVGSDVAVTLEFRTSQSEGVFLGISSAKVD
AIGLEMKNGQVVFNVNNGAGRVSVRSTGQVLCDGRWHRLQARKTKHTLSLSVDGRTFTTP
NPYPQSTSAETNNPVYLGGYPVEVKQNCLSITSRFRGCLRNLQLIKSHLSDTLDLSSAHF
RLGVTPNSCPVA
NT seq
9219 nt
NT seq
+upstream
nt +downstream
nt
atgaagttactggtcttgttgctgctgatggaacaaactgcagctcagcaaagaggtctg
tttcccgccatcttgaacctcgcgagtaacgccatgatcagcagcaacgccacgtgtgga
gatccagaacctgaagtttactgtaaactggttgaacacgttccaggaagaacaatcaag
aacccacactgtcccaaatgtgatgccaactccgtcctgtccaaagaacgtcatccgatc
acaaacgccatcgacgggacaaatcaatggtggcagagtccgagtatcaagaacggacaa
cagttccactggatcaccatcacactggatctaaaacagatttttcaagtcgcctacatc
atcatcaaggcagcgaactctcctcgcccaggtaactggatccttgagcgttctctggat
ggtgtgaactttgacccctggcagttctacgccatcagtgattctgagtgtttgactcgt
tacaacatcacaccgagactcggacctccgacctacaaaagggacagggaggtcatctgc
acgtcgtactactccagactcaacccgctggagcacggggagatccacacgtctctgatt
aacggccgacccagtgcagatgatttgacctctgacctgctgaacttcacgtcagctcgt
tacatcagactgagacttcagcgaatcagaactctgaacgccgacctgatgaccctgagt
gcacacgacccccgagacattgaccccatcgtgacccggaggtattattattccatcaaa
gacgtgtctgtgggcggaatgtgtatctgctacggacacgcgaagagctgccccctggat
actgttaccaagaagctgcagtgtgtgtgtgaacacaacacctgtggagagaactgtaac
aagtgttgccctggttaccaccaagagccatggcaaccaggaaccatctccgagggaaac
acatgtgaaaagtgtaactgtcacaacaaagcagtcgactgtttctacaatcaaaccgtc
tcagaactgttgttgagtttaaactctggcggcgttcgtcgtggaggcggagtttgtatc
aactgtcaacaaaacacagccggcatcaactgtgagacgtgtcgtgatggacactacaga
cctgctgaggtctctccatactcagattctccgtgtgttgggtgtcgttgtgatgtcaga
ggatcgacgtcttcagtctgtgccagagacgacacacaaccaggtcagtgtgtgtgtcac
cagggttttgcaggtcgacagtgtgatcgttgtgcgtttggatacagagattttccacat
tgtgttcgctgtgagtgtgacctgtcaggcagcatcaacaccgacccctgcagcccctgc
acctgcaaggtgaacgtgatgggagctcactgtgatctctgcaaaccgggtttctacaac
ctgcaggagaaaaatcctctcggctgcaccaactgtttttgtttcggtgtttccgatgta
tgtgagagctccacctggtccacagctcaggtgtttcatggggatgcttggctccacccc
tctcagtcacaccacatccccactgctgtccatagcaacgacctcatcctccctggcaac
acctcgtctggccacatccatcaactagtgctctcatgggcagcacctgccagtttccta
ggcaacaagctgatgtctttcggaggttacctgaactatgacgtggtttatgacatccca
ttggataatgaagaccactctctccccgcccactctgacatcattattgagggtaacggc
cgggctcttcgtctctcacccctcctcgtcctcctcctctctccactggccgagcgctct
gttgccttggcaatgatccctcagcgttttgtggatgatcagacaggtgatcacgtaacc
cgcgacgacctgctgtcggtccttgccggcatgacgtcactgagggtcagagttcacttg
aacgcctctgccgatggacctatacgtctcagtcgagtgtctctggacgttgggaactct
caatcagtttctgggattcaggccgttgccgtggagacgtgtgaatgtccgtggggttac
agcggaacttcctgtgagacatgtctcccaggtttctacagagtgggaggagtcttgttt
ggaggaaactgtctgcagtgtgagtgtaacgatcacgctactgagtgtgatgtcaacgga
gtttgtttgggttgtacccacaacactacaggttctcactgtgatcagtgtctccctggt
ttctatggcgatgccacagaggggacaccgagtgactgtcggatgtgtccgtgtcctctg
acagagccatccaacagtttcagccccacgtgtgtgctggaggtgtctggtcaggtgtca
tgtgaccaatgtcagggcggatacacgggagcaaactgtgagaggtgtgccagtggttac
tatggtaacccacaggtggtgggtggcgcatgtgtacgctgtgagtgtaacggtaacgtg
gacgtcagcgaggtgggacactgtgacgacatcactggagactgtctccgttgccttggt
aacacggctgggagtcactgcgaggtctgtcagcctggatactatggagatgccttacac
accaaggactgtcgggagtgcggctgtgacgtcagcggcgctccctccagtgcgtgtgat
gtcacaacaggtcaatgttcatgtagagaaaatgtgacaggaagaacttgtgaccgttgc
cagtcggggttcttcgggctgcagagtgggcggggctgctcggcctgcaactgccaatct
ggatctagttctgagtcatgtgatgaggacggccggtgccagtgtgtcgtgggcgtcggt
ggagacaagtgtgaccactgtagtcgtggttactatggtttccatggcattggctgcaca
gcatgcacctgttatcacactggtgggaactgtgaccccgagaacggagagtgtgtctgc
cccgcccacacagagggagacaattgtgacaggtgtgaagcaggttactggggtcataac
cttaccacagggtgcaagtcctgcagctgcagcgcagaaggaagctccacccctcagtgt
gatgtcacaaatgggcagtgccagtgcagtgaggggtttgctggcaggtcatgtgaccag
tgcgcacctggttaccatggttacccagcatgctcggcatgtggctgcgacacgtcagga
acagaagataggttctgtaacagaacgctgggagtgtgtgactgtcgacacactggagag
tgtgtgtgcaaggtgggtgtgtcagggcgccgttgtgaggagtgtgtctctggttggttc
ggtttgtcagcgatgaatccatacggctgctctcagtgtttctgttcaggactgagccga
gactgtgaggagaagggaggactgaccagagtacctatcaccctggctcgctcgcctgct
ctcttgtcattggtcactcagtcaaacctccagggtgtagtaactggagtttaccagcag
gatggtgacgtgctccttgacacccgtcagctcaacataagcagactgaccggtccattc
tactggagactgccaccccagttccaaggcagccagctgctgtcgtacggaggcctgctg
tcttacatcatcactttctatgctgaagatggtttgggactgtccaatcaggagcctcag
gttctgatgaggggcgggattctgaggaagtttgttatatacactgacatggttgcccct
ggcaatggcgtcatgactccgcatgagatcaggatgacagagcataaatggaagtatttt
aactcggtgtcagagaaggcggtaagtcacgatgacttcatgtccgtcctgagtaacgtc
cagtatgtgatcatcaaggcttcatatggcaccagactgcagcagagcaggatctctaac
atcaccatggagacagcggtggaggcgaagttagagcaagagccaggtgtcacaggggaa
gtggtccgactcattgagtcgtgcaattgtccacctggacacacgggactgtcctgtcag
gagtgtgcagcaggttattttcatcggcctcagtctgaattatcatctcagagtcagaag
ttgatgtttgttcatccgtgtgttcgctgccgctgcaacaaccacagtgagatctgtgac
acggagactggagactgtcaggactgccagcatcacaccgctgggcggagctgtgagttc
tgtgccccggggcattatgggaacgtcagtggttccaccagtgactgttcgctgtgtgcc
tgccctctacgggacaacagtttcagtcccacttgtgcgtcagagggagcgcttggcgac
ttccgctgcaacgcgtgtcagacagggtacgaggggagatactgtgaaaggtgttctgtc
ggttactacggtaacccctcaatgcccggtgggaggtgttcacggtgtaactgcagcagg
tggggttccccccgctcactgtgtgatgcactgaccggacagtgtgagtgtaaagcaggg
gtcaaaggtcagtcatgtgaccagtgtgatgacagacacgtcctgcagggggaggagtgt
gtgtcgtgtgacgacgagtgcacgggcgttctgctggacgacctggaccaactacacaac
aacttcttttctgtcaatgtgagtggcgttaccatggcaccataccgccagctggtggtg
ctgaagaaccagaccggcaacatcaagtcgctgttgtcagagaaacgctccgtcactctt
catctgtccagagtggaagaggatttgaatcatttgacctctgaccttagtgctttactc
aagcaggtcacacgtgtgtctgacgacctgcaggaagtgggcgtgtccacaaacatcagc
ctctcccagggtgcattgctccttgagagtatcagcaaccttctagacaatattcaggtg
ctgcagagggaggcggggcatctgaaccagacaacagaggaggagcctgaatcagccaat
cagacacatttgttggaggcgttagagttcatgttggataccatgagagctgtcaatcta
acagccgccaacaactcagccaatcaggagctcagcctgtcacagtctctcgttcactcg
ctgaaggtcgacttcctgtccagcaggacactggttgacaacaggctccgcccccttgtc
gcctcacttactgtcaacatggaaatgttgaaaaacgcacacgtacatttaaacaatgcc
gcacaacaaaacacacaaacacactctcggctgaacatcacacactctgtgctgcaacaa
taccagtctgtccatcaggacctgacctctgagtgtctttctgtggacggacggttggac
aacagtcagctgttgttggacgacagcgtcagtttgatggatgagttaacaaacaccacg
acgcaggtggagctgttggctggtcagttggatcagtggcgccccctgttgaggaaacag
gtggacagcttggttgttggactaaagatgacagacgccctggaaaatgtttaccgtgca
gagagccacgcccaccagctgcagagccacgcccactcactgcacagctttctgtcgtct
gtgtgtaacgtgtcacaaaacagcagccgattggtccagatcgacagtgacatcaccaag
cgagttgactctgcccagcaggtggccttgatcgcccatttttccgcctccctcgctctt
aatatgaccgtccaatcagtgcagctgctgtcagaggagggcggagccaaacagaacatc
agctctgctgttttacaaagaagtcgacaaatcaacaagaccgctgaggacctgcagctg
aatgtctccatggtaaccagtagactgggacgtgtcaaagagagtgtccttaactcaagc
ttcctcatccttcagccaatcagagagctgcagagcatctctaatggttcgaccatgtca
ttgcagcaggctcagcttcaggctgcagcagcccactctggcctgcaggtggcgctaaag
cagctgcagagacttgaagatcagctgcaggattcttcttctgtggtggaaaacacgatc
cacaccgtgagggagactaaccggctggtgactcacacacatgctgcagccaatgaggcg
cagcgtaagctgcaggaggcggagcatcacacagagcgtctgatggagcgaataaagcca
ctgagcatcctgggtgaaacactgagccggaacctgtccgacatcagagaactgattgat
caggcccgtcgacaagctgcttcgattaaggtggcggtgcaggcggacggagactgtgtt
cgatcctacaaacctcagattcagtcgagtaacttcaacaccgtcagtctgatcctgaag
acgaccagtcgacaaaaccttctcttctacctgggcagcaacataacggtggactacctg
gctatagagatgcatgatgggaaggcatctctggtttgggatttgggttcaggcagcaac
agactggagtttcctggactggacatcaccaacaacaggtggacccgagtcaatgctaca
aggtttggggcccaggtctctctttcagtccatcagctggaatcagagacagctcaactt
cctgcggtaacagcactatcaccaggatcctccagagttttagacatcaacaaaaacaca
gtgatgcacatcggaggcctgggagctcacattcagagccctgcggcgctgaggtcctac
acctttcagggctgtctcggtgaagtgttgctgaacgagagaaacattggactgtggaac
tacgacagcagagagggagagtgtggaggctgcttcagcagtccccaggcagaggagacg
tccttccactttgatggatctggattctcattggtccagaagtctctgcgtgcgacttcc
acctccatcgtgctactgtttaaaactctgtcaccaggcggattactgctctatctcgcc
tccaacaacacgagagacttcctgtccatagagctggtggaggggcatgtccgtcttacg
tttgaccttggttcaggtgttctgaccctgacctctaacaggaagtacaacactggggtg
tggtacaagatcaccctgcagaggaacaaacgcaaaggttacctgtccatcatggctgct
gaccaatcatcggagaaggaagtgttggaggcagagtctcctgggattgcctccgacctg
aaccgctccgacctcgaccccatctacataggaggacttcctgcctccagaccaatcagg
cgacaggtggtgtccaggtcgtacgttggctgtataaagaacgtggaaatagctcgatcc
aacttcgacctgctgagagacgcatacggagtcaggaagggctgtgtcctcaaggctgta
cggagtgtgtcagttctgtccggaggctttgtccagatcattcctccatcatttggtcag
gaggtggagcttctcttctccttctcctccaacaaccaatcaggaatcctgctggctgcc
ttcagtgagggacgatcgcacagacagcacttcctgtctgctcacctggtctcaggtgca
ttggagacggagcttggtgaagtgggaggagccactcggagggtgatggtgatgaaatct
gatagaggatccttcggcgatggagaaaaacactctgtgattatcaccatcaacaggaag
tctctgtcagtgcaggtggacgaggatcacctgaagtccgttcctctgttgccaggcgga
ttgtcccgtctgtctccagcctctttcttcattggtgggctgccctcaggagaggagtcc
catcttccaatcagattacaggatttagccaggggattcagaggctgcatccaacacctg
gtggtgggcagagcacttgtcgacctatcaggagctgtgaggtatgagggggttgagctt
gacagctgtctattggaggcgagagttgtggcagtgcttcctgacgaccaggatatagaa
ccaactcctgacccaacccacctgtctgtagccacgcccacacacctcagtgcctggaca
cctggagcacttgcgtgtgtgtcagaggcggagccaaccttcctgccgtcagctgctcag
tttggttcttctaaacacagtcacatgaccttcatcattaaccccaacacgttcaagaag
agcgtctctgtgaggttatcggttcgtagccgagcatcagatggtttgatcctcctgctt
tccgactccaaacacatggacttcatcctcctcagactgactgggggcagactgatgatg
tcagctgacctgggaaaaggccccgcctccatcagctcgtctgtcgccatcaatgatgga
gactggcactctgtgagcgccgaggtcagccggcggctggtgaccctgtcagttgacagt
tcaaatccggactctgtgacagttaaaggaaaccagctggacgtggacgacacgctctac
ctgggaggattaccacacacacacgccaccagaaggatcaatgtaagcagcagtttacca
ggttgtgttcactccgtcagcctgaacggcgccatgttggacctgaccaagcccgtctca
cagcataatgtcacttcctgtttcaccaaagaccagacaggaagttattttaacggcagt
ggctacacggtcctcatgcatgatgggtataaggttggttcggatgtagctgtgactctg
gagtttcgaacgagccaatcagaaggagtgtttctgggaatcagcagcgcgaaggtcgac
gccatcggactagagatgaagaacggacaggtcgtgtttaacgtgaacaatggggcagga
cgagtgtcggtgcgttcgactggtcaggtgttgtgtgacggacggtggcaccgcctccag
gccagaaagaccaaacacaccctaagtctgagtgtagatgggcggactttcaccaccccc
aacccctacccacaatccacctctgctgaaaccaacaaccccgtctatctaggagggtat
ccagtggaagtgaagcagaactgcctgtcgatcacctccaggtttagaggatgtctgagg
aacctgcagctcatcaagtctcacctgagtgacactcttgacctgagctccgcccacttc
cggttgggtgttacgcctaactcgtgtcctgttgcctag
DBGET
integrated database retrieval system
