Scophthalmus maximus (turbot): 118292335
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Entry
118292335 CDS
T09850
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118292335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118292335
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118292335
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118292335
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF6650
7tm_6
Motif
Other DBs
NCBI-GeneID:
118292335
NCBI-ProteinID:
XP_035477108
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Position
22:13689782..13710224
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AA seq
951 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKGYDPLLHNISWKSLHNAANANQKEKYEAD
LKKEIKKLQRLRDQIKTWVASNEIKDKRQLVDNRKLIETQMERFKIVERETKTKAYSKEG
LGLAQKVDPAQKEKEEVGTWLTNMIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIE
ELKKFIEKHRHHIRMLETILRMLDNDSVQVDSIRKVKDDVEYYVDSSQDPDFEENEFLYD
DLDLEDIPQTLVATSPPGTSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKK
RGRSTDSEVSQSPVKNGNPSSSLSSSSSSSSSSSSSSSCSSSSSVSGLTPSSLVSMVTIA
GAGGSGSGGNGHHGNSGGLLSNTSAGSYSNATQQQPHPSAQQPQAKISVSSSSSSSAPVT
NPSTNSHPASSASLPPSIGTQVLLTSNPQPLAPLGPAPTSNSFGLGLSLGKGGMSGSISA
GPMSGGLGLSGMPASLSSMASLLSGSTPAPYAQAAASGAVGSGLPGSLGGVITTSTSNNA
VGSIGSGSITVGGPTSSSGGLLGSSTVVSGISSGILGLGSSPSGVQGPSLVSLSPVGSLA
PGSGVGVIGSSGSSSGSAGSGVVGVNLSLSVGPTSRQKQNGSTSYSAVVGDSATESALIS
VSQSQSSQPSSLTSAANQLKDTGPSLLGSLTLSSSSPSPASYSEAKMVSCGGSLLNGPLS
YSQSSDSIKPQEPLSSLKSMAERAALSSGMEGDMPSLHLTPDIFTSSTTGPSGPPSAPQS
SLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRCSEMQYLMRNP
CPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKY
MMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggag
ggagtggaacagttcgaagacatctggcaaaagggttatgacccactcctccacaacatt
tcatggaaatcacttcacaacgcagccaacgcaaaccagaaggagaaatatgaagcagac
ctcaagaaagagattaaaaagctccagcgtcttcgagaccagatcaagacgtgggtggcg
tccaacgagatcaaagacaaacggcagctagtagacaatcggaaactcatagagacgcaa
atggagcggttcaagattgtggagagagaaaccaagactaaggcctactcaaaggaagga
ctgggtctggcccagaaggtggatccagcccagaaggagaaggaggaggtcgggacgtgg
ctcacgaatatgatcgacacgttaaacatgcaggtggatcagttcgagagtgaagtggag
tctctgtcggtccagacaagaaaaaagaaaggagacaaagagaagcaggaccggattgag
gagctgaagaagtttatcgaaaagcatcggcaccacatccggatgctggagacgatactg
aggatgctggacaacgactcggtgcaggtggactcgatcaggaaggtcaaggacgacgtg
gagtactacgtagactcgtcgcaggatccagactttgaggagaatgagtttctgtacgac
gacctggatctggaagacattcctcagacgctggtcgccacctccccgccgggaacatct
cacttggaggacgagatcttccagcactccagcagcactcccacctccaccacctcgtcc
tcacccatccccccctcgcctgccacttgcactacggagaactcggaggacgacaagaag
agaggacgttcaacggacagtgaagttagtcagtcgcctgtgaagaacggaaacccctcc
tcctcattatcctcttcctcatcctcgtcctcctcctcgtcctcctcgtcctcctgctcc
tcttcttcctctgtctcaggactgaccccatcttcgctggtctctatggtgaccatcgcc
ggggccggaggcagcggctctgggggcaacggtcatcacggcaactcggggggtctcctc
tccaacacctccgccggcagctacagcaacgccacccagcagcaaccgcacccgtcggca
cagcaaccacaggccaaaatctctgttagctcctcctcctcctcctcagctcccgtcacc
aaccccagcaccaacagccaccccgcctcctcagcctccttgccccccagcatcggcacg
caggtgctcctgacgtcaaacccccagcccctcgctccgttggggcccgctccgacctcc
aacagcttcggcctcggcctctctctgggaaaaggcggcatgtcaggctccatctccgcc
ggcccgatgtccgggggcctcggcttgtcagggatgccggcgtccctgagcagcatggcg
agccttctatccggctccaccccagcgccgtacgctcaggcggctgcctcgggtgcggtc
ggctccggtttaccgggctccctgggaggcgtcatcaccacgtcgacgagcaacaacgca
gtgggctccatcggcagcgggagcatcacggtcggtgggccgacgtcctcatcaggaggc
ttgctgggttcgtcgacggtggtgagcggcatcagctctgggattctgggtttgggctcc
agcccgtcgggggtgcagggcccgtctctggtgtcactgagcccggtaggaagcctcgcc
ccggggagcggagtgggagtcatcgggagcagcggaagcagctcgggatcggccgggagc
ggagtggtgggagtaaacttgtcgctctccgtcggcccaacgagccgacagaagcagaac
ggaagcactagttacagtgctgtggtcggtgacagcgcaacagagtccgccctcatcagt
gtcagccaatcacagagcagccaaccctcgtctttgacctccgcagccaatcagcttaag
gacactggtcccagtttactgggctccctcactttgtcgtccagctctccgtcgccagcc
tcctacagcgaggccaaaatggtgagctgcggcggcagcctgctgaatgggccgctgtca
tactcgcagtcctctgatagcatcaagccccaggagcctctgagcagcctgaagtccatg
gccgagcgagcagcactcagctcagggatggagggagacatgccttcgctgcacctcacc
ccagacatcttcaccagcagcactacgggcccctcgggccccccgtcggcgcctcagtcc
tcgttgtcggaggtcagcatccccccgtcgctgggggtctgcccgctggggccggtcccc
ctgtccaaagaccagctctaccaacaggccatggaggaggcagcgtggacgcacatgccc
cacccgtccgactccgagaggatcaggtgcagtgaaatgcagtacctgatgaggaacccc
tgccccacgctgcctttccaccaccaggtgccgccaccccactccgacacggtggagttc
taccagaggctttccacggaaacgctcttcttcatcttctactacctggagggcactaag
gcccagtatctggcagccaaagctctgaagaaacagtcctggaggttccacaccaagtac
atgatgtggtttcagaggcacgaagaacccaagaccatcaccgacgagttcgagcaggga
acgtacatttactttgactatgagaaatggggccagcggaagaaggaaggttttacgttt
gagtaccggtacctagaagaccgtgacctccagtga
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