Scophthalmus maximus (turbot): 118292436
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Entry
118292436 CDS
T09850
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smau04121
]
118292436 (pdzrn4)
Enzymes [BR:
smau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118292436 (pdzrn4)
Ubiquitin system [BR:
smau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118292436 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
118292436
NCBI-ProteinID:
XP_035477271
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All DBs
Position
12:16528363..16561081
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AA seq
820 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKVDHDDAVVEAIRRDPIVVQVLRRTPAAGT
AAVAHNHSGAPQDVCVVDVCTQTDITFEHIVALAKLRPTTPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRQNSLEKLGLTLCYRTDDEEDTSIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEARSIILLVTRPEIQLEEE
VWLDDEQQELVEELKMEILEERRRKLKEHNFDRRDELQAEEEMTTDTATCSSNNQDSGFG
HSTDSPEHQPLLARLHRRSPAHCLRERWRAEHPHTTSGTVVPPDTKSQKTMSKGQGREGV
LSIRNSGGGVLGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSLTEQTVGDADVVDSD
GGEGGVEHELRMLNEELRSIELECQSIMQAHQLRNTHLDPSQPTPCSPGQSPKERHKRHG
RLADIHEHPERSDSDKIREKDSSSAYNTAESARSTPLGMERSPDHSLQRHISITNQKNLR
KASSAPSSPIPIPKPHGTPIRSRPADPGPIISSSPDQSNPSRSESDPAMPADDERCEKKG
RTRESRRGLPYGYSYQTTPYQGQGGSRQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPVH
RNGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMK
MGRYWSKEERKQHLARAREQRKRREFMQKSRLECLREGPASGAEGRKEINILELSHKKMM
KKRNKKILDNWMTIQELMSHGARIPEGSKVHNAFLSVTTV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtgaacgggcgcgatttctccaaggtcgaccacgacgatgcggtggtggag
gccatcagacgagaccccatcgttgtccaggttctccggcgaacccccgccgctggcacg
gcggccgtcgcacacaaccacagcggcgcgccacaggacgtgtgtgtcgtcgacgtctgc
acgcagacggacatcaccttcgagcacatcgtggcactggccaagctccggccgaccact
ccgcccgtccccgacatctgtcccttccttttgtctgacagctgccattccatccacacc
atggagcacgagttttatgaatgtccagagtacctgtccaacaccccagcagaggtggag
aggactgaagagtatgaatatgaggaggtggagctgtgtcggcagaacagcctggagaag
ctcggcctgacgctgtgctacaggacggacgacgaggaggacaccagcatctacgtcagc
caggtggagccaaacagtatagcggcgagagacgggcgcatcaaggaaggagaccgtatt
ttacagataaatggctgtgaggtgcaagacagagagaaagccgttgctctgttgtcaagt
gaagaggcaaggagcatcattctactggtgacaagaccagaaatccagctggaggaggag
gtatggctggatgacgagcagcaggagctggtggaagagctgaagatggagatcctggag
gagcggaggaggaagctgaaggaacacaactttgacagaagggatgagcttcaagctgag
gaagagatgacaacagacacagctacctgttcctccaataaccaagacagtggctttggt
cacagcacagacagtccggagcaccaacccctgctggccagacttcacaggaggagcccg
gcccattgcctgagggagcgatggcgggcagagcatccacacacaacaagtgggactgta
gtgccaccggacaccaagagtcaaaagacaatgtctaaaggccaaggccgtgaaggagta
cttagtatacgcaatagtggaggtggggtcctaggtttagagaatcgcttccagcaactt
ctggagctcaagtgtcaaatccggaatggaggcgagtgcggagtgtactccattcgacac
agtatagagtgtagcctcactgagcagacagtaggggatgcagatgttgtggatagtgac
ggaggagagggaggggtggagcatgagttgaggatgctaaacgaggaactgcgtagcatt
gagctagagtgccagagcatcatgcaggcacaccagctccgcaacacccaccttgaccct
tcacagcccacaccctgctcaccaggacagagccccaaagaaagacacaagcggcacggc
aggctggctgacatccacgaacacccagagaggtcagacagcgacaagattagggagaag
gacagttccagtgcctacaacacagccgagagtgcacggtcaacaccgctaggtatggag
agatctcctgaccactctctacagagacacatcagtatcaccaaccagaaaaacctcaga
aaggcctcttccgcaccctccagcccgatccctatccctaagccccacggtacacccatc
cgtagcagaccagcagacccgggccccattatcagcagcagcccagaccagagcaacccc
tccaggtcggagtcagaccctgccatgcctgcagatgatgagaggtgtgagaagaaaggg
agaaccagagaatctagaagagggcttccctatgggtattcatatcaaacaaccccttat
caaggccaaggaggatccaggcaacttcagagttacatgcagctgctacaacagcactca
tccctggagtattcccagagccagctgagtctgctcagcgtctgtagagatcccgtgcat
cggaacggacgccccggggaaccccgtctggagtggaaggtcaaagtgcgcgctgacggc
acacgctatgtggcccggaggcctgcccgtgatcgcatcctgagggagcgggcactaagg
atccgagaggagcggagcggaggcatgaccacagatgatgacgccatgagcgagatgaag
atgggtcgctactggagcaaagaggaaaggaagcagcacttggcacgggccagggagcag
aggaagaggagggagtttatgcaaaagagccgtctagagtgtctaagggagggaccagcc
agcggagctgagggcaggaaagagatcaatatcttagagctcagtcacaaaaagatgatg
aagaaacgaaacaaaaagatccttgacaactggatgaccatccaggagttgatgagccat
ggggccagaatccctgagggctcaaaagtacacaatgccttcctgtctgtcacgactgtc
taa
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