Scophthalmus maximus (turbot): 118298880
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Entry
118298880 CDS
T09850
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118298880 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118298880 (supt5h)
03019 Messenger RNA biogenesis [BR:
smau03019
]
118298880 (supt5h)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118298880 (supt5h)
RNA polymerase I system
118298880 (supt5h)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
118298880 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
118298880
NCBI-ProteinID:
XP_047191436
LinkDB
All DBs
Position
11:complement(24421763..24436401)
Genome browser
AA seq
1096 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVENEEETASPVGSDKVAEEEGEDLEDEEEYDEEEEE
DDDDRPRKKPRHGGFILDEADVDDEYEDEDDQWEEGAEDILEKVNEEAEVSNIDHVVLDE
DHSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFSGGSEELSDDITQQQLLPGVKDP
NLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKS
AIEGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVE
PSQNTISLKMIPRIDLERIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGD
FMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRIGDHV
KVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFT
VGGFAPMSPRISSPVHHGGGGAPQRGGGGGGPGGGGGGGGGGGGMGRGRGRRDNELIGQT
VRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTAMGAKRHSGMTSAHGRTP
MYGSQTPMYGTGSRTPMYGSQTPLHDAGNRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNT
PSRNDEEYDFGYDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTE
QYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPV
GYSPMTPGAPSPGGYNPHTPGSNIEQGGSDWVTTDILVRVKDSLMDLMGQTGVIRSITGG
MCSVFMQESEKVVSISSDHLEPVIPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELD
DQLKILNLRFLGRLEH
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagcgacttctccgacaaccagagcgagcgcagcagcgacggg
gaggccgaggaggtggagaatgaggaggagacggcgagccccgtgggcagcgacaaggta
gctgaggaggagggtgaggacctggaggacgaggaagagtacgacgaagaggaggaggag
gacgatgacgaccgtcccaggaagaagccgagacacggaggattcatcctggatgaagcc
gatgtggatgacgaatatgaggatgaagacgatcagtgggaggaaggcgccgaagatatt
ttggaaaaagttaacgaggaggctgaagtgtcgaacatcgaccatgtggttctggacgaa
gatcactccgggtcacggcggctgcagaatctctggagagactccagagaggaggcgctt
ggtgaatactacatgaggaaatatgccaagtcgtccgggggggagcatttctccggaggg
tcggaggagctgtctgatgacatcacccagcagcagctacttcctggagtcaaggatcca
aatctgtggacggttaagtgcaagatcggagaggagagggcgactgccatctcgttgatg
aggaagttcatcgcctaccagttcaccgacacgcccctgcagatcaagtcggtggttgcc
cccgatcacgtcaagggctacatctacgtggagtcgtacaagcagacgcacgtgaagtcg
gccatcgagggcatcggcaacctgaggatgggcttctggaaccagcagatggttcccatc
aaggagatgacggacgtgctcaaggtcgtcaaggaggtcaccaacctgaagcccaaatcc
tgggtccgactgaagaggggcctgtacaaggacgacatcgctcaggtcgactacgtggag
ccgagtcagaacaccatctctctgaagatgatccctcgaattgacctggaacgcatcaag
gctaagatgagtctgaaagactggttcgccaagaggaagaagttcaagaggccagcgcag
aggctgtttgacgctgagaagatcaggtcgttgggcggagaggtcagccacgacggagac
ttcatgatctttgaggggaaccgttacagccgcaaaggattcctgttcaagagcttcgcc
atgtcggccgtgatcacggacggagtgaagcccacgctgtcggagctggagaagttcgag
gaccagcccgaaggaatcgacctggaggtggtgacagagtcaggtaaggagcgtgaacat
aacctgcaggccggtgacaacgtggaggtgtgtgagggagagttgatcaacctgcagggg
aaaatcctgagcgtggatggcaacaagatcaccatcatgcccaaacacgaagacctgaag
gaccccctggagttcccggctcatgagttgaggaaatacttccgtatcggcgaccacgtg
aaagtgatcgccggccgatacgaaggagacacgggcctcatcgtccgagtagaggagaac
ttcgtcatcctcttctctgacctcaccatgcacgagctgaaggtgctgcctagagacctg
cagctctgctcggagacggcgtccggcgtggatgcgggagggcagcacgagtggggtgag
ctggtacagttggacccgcagacggtcggagtcatcgttcgactggagagagagacgttt
caggtgctgaacatgcacgggaaggtgatgacggtgcgccaccaggcggtgaaccgcaga
aaggacaaccgcttcgccgtggcgctggactcggagcagaacaacatccacgtcaaggac
atcgtgaaggtcatcgacgggccgcactcgggccgcgaaggcgagatccgacacctgttc
cgaggctttgccttcctccactgcaagaagctggtggagaacggaggcatgttcgtctgc
aagaccagacacctggtgttggctggcggatccaagcccagggacgtgacaaacttcacc
gtgggaggattcgctccgatgagccctcgcatcagcagccccgtgcatcacggcggagga
ggtgctccgcagagaggaggcggcggaggcggaccgggaggaggaggaggagggggaggg
ggaggagggggaatggggcggggccgaggacggcgagacaacgagctgattggtcagacg
gttcgcatctctcagggcccttacaaaggttacatcggggtggtgaaggacgccacagag
tccacggcccgggtggagcttcactccacctgccagaccatctccgtggaccgacagcga
ctaacggccatgggagccaagagacacagtggaatgacctccgcccacggacgcaccccc
atgtatggctcccagactcccatgtacggcaccggctcccggacgcccatgtacggctcc
cagacgccactgcacgacgctggaaaccgtacgcctcactatggctctcagaccccgctg
catgatgggagcaggacaccgggtcagagcggcgcctgggaccccagcaaccccaacacg
ccctccagaaacgatgaagagtacgactttggctacgacgacgagccctccccctcccct
cagggatacgggggaacccccaacccccagacgccaggttacccggaagtcccctctcct
caggtcaaccctcagtacaacccccagactccgggcacgcctgcgatgtataacacggag
cagtattcgccgtacgccgccccgtcccctcagggctcctatcagcccagtcccagtcct
cagagttaccaccaggtggcgccatcgcccgtcggataccagaacacgcactcgcctgca
agctaccatccaacgccgtcgcccatggcctatcaggccagtcccagtcccagtcccgtg
ggctacagtcccatgacgcctggagcgccctctcctggaggctacaaccctcacaccccg
ggctccaacatcgagcagggcggcagcgactgggtgaccaccgacatcctggtccgagtc
aaggactcgttgatggacctgatgggacagacgggcgtcattaggagcatcacgggaggg
atgtgttccgtgttcatgcaggagtcggagaaggtcgtcagtatcagcagtgatcacctg
gagcccgtcattcccaccaagaacaacaaggtgaaggtgatcctgggagaggaccgcgag
gcgacggggatcctgctgagcatcgacggggacgacggcatcgttcgcatggagctggac
gaccagctgaagatcctcaacctgaggttcctgggacgtctcgagcactga
DBGET
integrated database retrieval system
