Scophthalmus maximus (turbot): 118299011
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Entry
118299011 CDS
T09850
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04270
Vascular smooth muscle contraction
smau04625
C-type lectin receptor signaling pathway
smau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118299011 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
118299011 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
118299011 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118299011 (arhgef12a)
Membrane trafficking [BR:
smau04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118299011 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
118299011
NCBI-ProteinID:
XP_035478215
LinkDB
All DBs
Position
11:14305950..14341317
Genome browser
AA seq
1443 aa
AA seq
DB search
MSDTQSSFTDRFPKKANRTSSILSKDHPPDKKPKSDKTSLPSNEFDPTEALVVQKSGSSS
VLAEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIK
VNGTLVTHSNHIEVVKLIKSGSYVALTVLGRPPGLAQIPLSEAESEMLGVSISSPNSPAT
ERPYSPQDRFSSTQPPWQDDNSSVCNQRVDALQRMLLKEQQELQAMKEEYSRNPSPKLLK
DIQEAKKHIPQLQGQLFKATGATQEAVPGGDADDGSMFESEHTLTSKGDNSTDMSWSSTP
LSHRFGPGSPDSMCLRDTSGPSPKSTPRNSFNSCHSPEAEDTTDLDSLSPTTVSSSSSSR
LVSQIIGAEDDYFDSDQEQTNGQCHSFNSIEQLKSRPAHLSAFLHHVISQFDPAPVLCYL
YADLYKQTNSKETRRVFMDLHTFFIDRGANLKVAVPESISSDLDRRRTELIPEEINRQHV
QTLQDSLLPDIQKNLEDFRQKRSMGLTVAEAELIRVDQERVRDRVTLERERSCAENIITK
IEDILLTTQTTEEEKCTTMQYVIYTYMKHLGVRVKEPRSLESKRVRINFLPKIKKSIKTE
KEGEEKVKKPRFPSILGPQRRPSRVEAGPVGKALDSRPRPQKQLSQPSLGATEHMEPGRL
RGSQSSEGSELTHSMSVNTSSPNSTTYSSDTSRDADIGGTPTSGPHRLSDGLQSDPLDGL
PYPASHFDLYSLDQLQEDDRESERAHEGTPKAIRRLEGLGAADVQSEDDQGTDSEHDPPN
WQQLVGQEVLAGLRPHEIKRQEVINELFYTERAHVRMLRVLDHVFYQKLSKEGILPPADI
KNIFTNLEEILQLHVSILEQMAAVRKRNESSVIDQIGDDLLSWFSGGEEEKIKQAVGTFC
SNQPFALEIIKTKQKKDSRFTSFIQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLENIS
KYTDNTVEKDKVKQAADCCRKILNHVNQAVKESEDKQRLEDYQRRLDLSSLKQTDNPMIL
ELKNLDLTKRTMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLILKCHCKNLAG
TADTKHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAPTVSDQRTWQRLIV
QRADAMKVKPHSIIPLPQSDGERDDVEIIPAGVSRLSRDADRTSTGSTQSTDKESSPAPR
GATQSSLPGNNPFERSKAEEEEVEEGFVDPELPYQVGEDGREGDSFNVFPSRADEALKTL
AALKQVLVTQLMSQEAAEQTKRSTGARLLRTTSLRTPIDSRARVMVHNGSEKGSTQTEDL
AQDLGSGDTGFFDSPDDYAGYLVLEGYGGPGESSTDDDILASTTGKQLSTSQGCATDSGI
NLRFSSTSQAGSLSSFSRQVLSHLRNLQSNLNYLKEVEAKYNNLIRQRPERSAADTDGNK
DKR
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccagcttcactgacaggtttcccaagaaagcaaacagaaccagc
agcattctcagtaaagaccatcccccagacaagaaacccaaaagtgacaagacctcactt
ccctccaatgagtttgaccctacagaagctctggtggtgcagaagagtggcagcagcagt
gtgctagcagaggggaagcctgagtcctgtggtctggtccagagatgtgtaatcatccag
aaagatgaaaatggctttgggctcactgtcagtggtgacaacccagtgtttgtgcagctt
gtcaaagaagatggggctgctatgcgggcaggtgttcagaccggagacaggatcatcaag
gttaatgggacacttgttacacactcaaaccacattgaagtggtgaagctaatcaaatcg
ggctcatatgtggccctcacggtgttggggcgccctccagggctcgcccagatccctttg
tctgaagcagaatctgaaatgctgggcgttagcatttcctctccaaactctccagcaacc
gaacgtccctacagtcctcaggaccgcttctcttctacacaaccaccatggcaggatgat
aatagcagtgtctgcaaccagagggttgatgccttgcaaaggatgctcttgaaagagcag
caggagctgcaggccatgaaggaggagtacagcaggaacccctcccccaaactactgaaa
gacatccaggaagctaaaaaacacattcctcagctgcagggtcagctcttcaaggccact
ggggcaacacaggaggctgttccaggcggtgatgcagatgatggtagcatgtttgagtca
gagcacactctcacctctaagggagacaacagtacagacatgtcctggagcagcactcct
ttatctcacagatttgggcctggatctccagacagtatgtgtctcagagacacatcaggc
cccagcccaaagagcacgcccaggaacagcttcaactcctgccactccccagaggcagag
gacaccactgacctggactctctgtcccccaccacagtcagcagttcctcttcttctcgc
ctcgtctcacaaatcattggagctgaggacgactactttgattcagaccaggaacagaca
aacggccagtgtcacagctttaacagcatcgagcagctcaagtctcgccccgcccacctc
tcagccttccttcaccacgtcatctctcagtttgaccccgctcctgtgctgtgctacctc
tatgctgacctctacaagcagaccaactccaaagagaccagacgggtgttcatggacctc
cacaccttcttcattgaccggggagcaaatttgaaagttgctgttcctgaatccatctct
tccgatcttgaccgacggcgaacagagctgatcccagaggaaataaaccgacaacatgtt
caaacactgcaggactctctgcttcctgacatccagaagaacctagaggatttcaggcag
aagcgcagtatgggtcttactgtggccgaagcagaattgattagagtggaccaagagcga
gtcagagaccgggtcactctggaacgagagcgctcgtgcgctgaaaacatcatcaccaag
atcgaggatatcctattaactactcagaccacagaggaagagaaatgcactacaatgcag
tatgtcatctatacatacatgaagcaccttggtgtgagggtcaaggaacctcgcagtctg
gagtccaaacgggtccggatcaactttctccccaagatcaagaaaagcataaagacagaa
aaggaaggagaggagaaggtgaaaaagcccaggtttcccagtatccttggacctcagcgt
cggcccagccgcgttgaagcaggaccagtgggtaaagccttggatagtcgcccccgacct
cagaaacaattgtctcagccttcattgggtgcaactgagcacatggaacctggccgttta
agaggcagccaatcaagcgagggctctgaactcacacactccatgtccgtcaacacctca
tcaccaaacagcaccacctacagctccgacacaagccgagacgctgatataggtggaact
ccgacctcaggcccccacaggctgagtgacggccttcagtccgaccctctggatgggctg
ccataccccgcctcgcactttgacctctacagcctggaccaactgcaagaggacgacaga
gaaagtgaaagagcccatgagggaacaccaaaggcaataagaaggcttgagggactgggt
gcagctgatgtacagagtgaggacgaccagggaacagactctgagcatgaccccccaaac
tggcaacagctggtgggacaagaagtcctcgcaggtctccggcctcatgagatcaagaga
caggaagttatcaatgagctgttctacacggagcgtgcacacgtgcggatgctgagagtt
ttggaccacgtcttctaccagaagctttccaaagagggcatcctccctcctgctgacatc
aagaacatcttcaccaacttggaggagattctgcagctgcatgtttcaatactggagcaa
atggcagccgttcggaagagaaatgagtcctcagtaattgatcagataggagacgacttg
ctctcttggttcagcggtggggaggaggagaagatcaagcaggcggtggggacgttctgc
agtaaccagccgtttgctctggagatcatcaagaccaagcagaagaaagactccaggttc
acttcgttcatccaggaggcagagagcaaccgactgtgccgcagactgcagctcaaagac
atcattcctgtggagatgcagcggctgactaagtaccctcttctactggaaaacatctcc
aagtacacagacaacacggtggagaaggacaaagtgaagcaggcggcagactgttgtagg
aagattctcaatcacgtcaaccaggctgtgaaggaatctgaggacaagcagaggctggag
gactatcagagaagactggacctctcctctctaaagcagacggacaaccccatgatcctg
gagctaaagaacctggatctaaccaagagaacgatggtgcacgaggggccgctgtcatgg
aaagtgaacaaggacaagacaattgaactgtacactctcctcctggaggacatcctggtt
cttctccagaaacaggacgagcgtttgatcctcaagtgtcactgcaaaaacctggcaggc
accgccgataccaaacacatattcagccccatcatcaaactcaacactgtgctggtgcgc
tccgtggccacagacaacaagtcctttttcgtgctttccatgtcagacaacggcgcccag
atctacgagctgatggcgcccacagtctcagatcagagaacgtggcagcgtctgatcgtt
cagagagccgatgccatgaaagtcaaacctcacagcatcataccgttacctcagagcgat
ggggagagagacgacgtggagatcatccccgcgggtgtttcaaggctgagtagagatgca
gaccgcacgtccaccggcagcacccagtccaccgataaagagagcagtccagcccctaga
ggcgcgacacagagctctctacctggtaataatccgtttgagaggtcgaaggcagaggaa
gaggaggtggaggaagggttcgtggacccagagcttccttaccaagtgggcgaagatggc
agagaaggagactcgtttaacgtgtttccctccagagcagacgaagcactgaaaacattg
gcggcgttaaagcaggtgttggtgacgcagctgatgtcccaggaggccgcagagcaaacc
aaacgctccacgggggctcgtctcctcaggactacctctctgcggacccccatcgacagc
cgcgctcgcgtgatggtccacaacggctcggagaagggcagcacacagacagaggaccta
gctcaggacctgggctccggggacacgggcttcttcgactcccccgacgactatgcagga
tacctggtcctggagggttacggtggcccaggggagagcagcacggatgacgacatcttg
gcatcaaccacagggaagcagctgagcacctcacaaggctgcgccacggactccggcatc
aacttgaggttttcttcgacgtcacaggccggcagcctctcctcgttcagcagacaagtc
ctgtctcacctcagaaacctccagtccaacctaaactatctgaaggaggttgaggccaag
tataataatctaatacgccaaaggccagagaggtcagcagcagacacggatggaaacaaa
gataagagatag
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