Scophthalmus maximus (turbot): 118299028
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Entry
118299028 CDS
T09850
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118299028
09123 Folding, sorting and degradation
03018 RNA degradation
118299028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118299028
03041 Spliceosome [BR:
smau03041
]
118299028
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118299028
mRNA cycle factors
Stress granule specific factors
118299028
Spliceosome [BR:
smau03041
]
Complex C
Other components
Complex C specific factors
118299028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
POP1_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
118299028
NCBI-ProteinID:
XP_035478281
UniProt:
A0A8D3AG15
LinkDB
All DBs
Position
1:1983342..1989716
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGRYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKDMNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQAFNTIRPTATANTQVPRM
MASQRMPTQALNQRPTSASATAAPVRAMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcccagctaccccatggcctcgctgtacgtgggcgacctgcacccg
gacgtcaccgaggccatgctgtacgagaagttcagcccggccggacccatcctgtccatc
agggtctgcagggacatgatcacccgccggtccctcggctacgcctacgtcaacttccag
cagccggcagacgccgagcgagccctggacaccatgaacttcgatgtgattaaaggcaga
ccactccgcatcatgtggtctcagcgtgatccctcgctgaggaagagtggagtcggcaac
atcttcatcaagaacctggacaagtccattgacaacaaggcgctctacgacacattctct
gcgtttggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccacgaggctgctgaacgggccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttggacgcttcaaatcacgcaaagagcgggag
gctgagcttggggcacgtgccagagagtttaccaatgtttacatcaagaactttggtgag
gatatggacgacgagaagctgaaggagttatttggcagatatgggcctgcactcagcatc
cgggtcatgactgacgagagtggcaaatccaagggatttggctttgttagcttcgagaga
cacgaagatgcacagaaggccgtggacgacatgaacggtaaagacatgaacggcaggcag
gtgtacgtgggccgcgcacagaagaaaggggaacggcagaacgagctgaagcgcaaattt
gagcagatgaaacaagatcgcatgaccagataccagggtgtcaatctgtacgtgaaaaac
ctggatgatggtctggatgacgagcgtctgcgtaaagaattctctccatttggaaccata
acaagtgctaaggtgatgatggagggtggtcgcagcaaaggcttcggctttgtgtgcttc
tcttccccagaagaggccactaaggctgtgacggagatgaatgggcgtattgttgctacc
aagccgctgtatgtggccctggcccaacgcaaggaggagcgccaggcccatctaaccaat
cagtacatgcagaggatggccactgttcgcgctgtgcccaaccctgtcctcaacccgtac
cagcctgccccaccctcaggctatttcatggcagctatacctcaggcccagaaccgcgcc
gcttactactcagccaaccagctggcacagctccgcccgagcccccgatgggccacgcaa
ggagtgcgtcctcaacacttccagaacatgcccaatgccatgcgcccctcagctcccagg
ccccaggcgttcaacaccatccgtcccaccgcgaccgccaacacccaggtgccacgcatg
atggcttcccagcgtatgcctacccaggccctcaaccagcgtcctaccagtgcttcagcc
accgcagccccagtgcgtgccatgccccagtacaaatatgctgctggtgtgcgcaaccct
cagcagcacatggcctcccagccacaggtcccgatgcagcagcctgctgtccatgtccaa
ggacaggagcccctgactgcctccatgctggctgctgcccctcctcaggaacagaagcag
atgctgggtgagcgtctgttccccctgatccagaacatgcaccccagcctggcgggtaag
atcacgggtatgctcctggagatcgacaactcggagctccttcacatgctcgagtccccc
gagtccctgcgctcaaaggtggatgaggctgtcgctgtgcttcaggcccaccaggccaag
gaggccgctcagaagtccaccactcctgctggggttcccagtgtctaa
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