Scophthalmus maximus (turbot): 118299172
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Entry
118299172 CDS
T09850
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118299172 (focad)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118299172 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
118299172
NCBI-ProteinID:
XP_035478568
LinkDB
All DBs
Position
1:26503812..26551977
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AA seq
1809 aa
AA seq
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MESLKTRFDFPSSVIQAQTVRTLVAAVLKEKGQNGRITQSSPQGPALEALWQQCCSDSAL
VRSACCDAVVLLVDQGHTELHYILYSVLNLLPSARHVQGLIKVIGRLLQMQADQRDRESH
FTCPYSIRNSPHPFITALENRVDCWPALLLEIDDFIVQAADRNEPAYITMLAPFLQYLYC
EPQQQPQHALLRHNLLRVLLPTHPGAASALQDKDEEKPSTVSDSLLHCLCQLVPHMQVDS
VEAVLELCGFIDALLHGLLRGSEEQWRTERARLLLQLLCACQRCLRLNGDCRPLLKLLQQ
LLPACQQELPVDELMMGLALLLLEAPAAQQTSLLSLALSLAPEQAELSPWLSPVLVLPVL
QLLSCSDLTEPLADRRTHSLNQSLAHSLLRSISRQTYKPRQPGPPLALPLSSWHSEVSVA
LSVLRRVADDPAAATDWLLSVRSAESCSQRLPGSLTLIVTYLIITGEEDVCQLALDASQA
FAAADPCQVPSLIPVLLFKLGKEKNPKLAHAVLNCLPNLGTHKLCVPMVLQTLYMLASAP
KLRAVVMRLTTALWKKQDRVYPELQRLLSQQDNRVVVGRDSQWEQILARAACLRDICRER
PYQHGGDMLAAITQTLNQCTRPDMATPAALALQGLQELCRAEVVDIISTWRLLGPELSCE
SRPLMVKAVAELLALVPRLTAKSEGYEKLKEEVVSFLWNYALSKQDPEVASCGYRALADF
PEAAHTITLLPEAARPASKLPEDEGEEEKGEEKEEEEKDLSIPGSSYVKLMALTHVSVLP
AFELFLTSLVKQEMSQMPRGVYFSALRGGNLRSDQGKTVAGIPTFMLRSYEKNKQPGLKP
GLAAGLLLSYELPVQSDRNGKPIDRFLISRSRSYQQTLTALIHEVNIQPSEWHRALLLPQ
AWRGFMSRAFHVVLQGRRADLEIKQKQGKENPEELQYKWHCAWLWARDQLADAIKVATKD
SPVVQGNSILALSGLAAVLAKYESNLPADSDGSLGAGPEFVPTASWLAMVLETLLSIISS
SYKARGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLVQVLSALQAG
LPGSPTADDSQAVQFHSGLALGMVLSSLHHQRLGDVSVQKDANVLLSSLDALESCSFNPN
LEYNTGCMLGLGLVLASLCRSGQKEQHVRVTQTLDKLLSNLQDSSGQGRMLQEVLAYTVA
CVGISAFDAGLIDGAKAEEVMNTLRTLTEESQQTPGFSLALGLVVHGLSLSGHGKAEDIH
PRLLAAWIKILLAEGCPTMQRLAAVNGLVALVGSESYLIQLKSDLELSTQQQNRLNEVIR
AITQIITFSGAIGLQSNCACLVAHLHLAHMSTSHSHTAVPQDFSYLSEKSVIRSIIDFIS
EAEKKGPEFCPPALVKTALTPLASVGASFQYPPINWSAVLSPLMRLSFGEDVQHQCVVLA
ACQAQSSQSASLFLGSWLSPPLVHSLSQRTRAHLYENLGLWMKHIAEDKLQVFAESLGLQ
QFQEDLRPQRLSLCRSLLQGLALAMALPNPPSNCWAILCSTTEKIFTLLPNQIQDDEVDL
YMGVAKCLSEMSDTEIDRIAQVTETQMEKTCFILAYLTSQGRVPLLGLNDIIAGVLRGWP
SQRIGWLLLQTFYQCRLATGSNTVVSKRLEWLLELMGHIRNVAYGATSVQCGDTRLATDF
LFQVFAAAVVSWGDHFMPFLLGIRAQWLPWHQGSRPRALQHSLYGQESLTEHALPQCLLG
VPHSLTLLLNKEPWSSQIQKFIDWFLSITESPEQSVSTATLSTAKAALLALKYSAEFKRK
TVWTRAYGW
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggagagtttgaagacccgatttgattttcccagctccgtcatacaagcccagacagtg
agaactcttgttgctgccgtactaaaggagaaaggacaaaatgggcgaatcacgcagtcg
tcccctcagggcccagcgttggaggctctgtggcagcaatgctgcagtgactccgctctg
gtgcgttcagcctgctgtgatgccgtggtgctgctggtggatcagggccacacagagctg
cactacatcctctacagtgtgctcaacctcctgccctctgccagacatgtccaggggctt
ataaaagtcattggacggctgctacagatgcaggcagaccagagagaccgagaatcacac
ttcacctgtccttactccatcaggaacagccctcacccattcatcacagccctggagaac
cgagtggactgctggccagctctgctgctggagattgatgatttcatcgtgcaggctgct
gacaggaatgagcctgcctacatcaccatgctggcccccttcctgcagtatctgtactgt
gaacctcagcagcaaccccagcacgccctcctccgacacaatctcctccgcgtgctgctg
cccacacacccaggggctgcgtcagccctccaggataaggatgaggagaagccctccaca
gtgtccgacagcctgctgcactgcctctgccagttggttccacacatgcaggtggacagc
gtggaggcggtgctggagctgtgtggattcatcgacgccctgcttcatggtcttcttcgg
ggctcggaggagcagtggaggactgagagagcccggctgcttctgcagctgctgtgtgcc
tgtcagcgctgcctcaggttaaacggagactgccggccgcttctcaagttattacagcag
ctcctgcctgcctgccaacaggagctgccggtggacgagctgatgatgggtttggccctg
ctcctgctagaggcccctgcagctcagcagaccagcctgctcagtctggcgctgagtttg
gctcctgagcaggctgagctatcgccctggttgagtccagtcctggtccttcctgtgctg
cagctgctgtcctgttcggacctcactgagcctctggccgaccggagaacacacagcctc
aaccagagcctcgcccacagcctgctccgcagcatcagccggcagacctataaacctcga
cagcccggtccaccattagctcttcctctcagttcctggcacagtgaggtcagcgtggct
ctgtccgtactgcgcagagttgcagacgatccagcggcagccactgattggctgctgtcg
gttcgctcggcggaatcatgcagccagcgcctgcctggctccctcaccctcattgtgacc
tatctcatcattactggtgaggaagacgtctgccagctggctttggatgcaagccaggcc
ttcgctgcagccgacccctgccaggtcccctccctcatccccgttctgttgttcaaactg
gggaaggaaaagaatccaaaactggctcatgctgtgctcaactgcctgccaaacctcggc
actcataagctttgtgtccccatggtgctgcagactctctacatgctggccagcgccccc
aagctgagagctgtggtaatgcgcctcacgactgctctctggaagaaacaggaccgagtt
tacccggagctgcagcgtctgctgagtcagcaggacaacagggtggtggtggggagggac
tcccagtgggagcagatcctggccagagcagcctgtctcagggacatctgcagagagagg
ccttaccagcatggaggtgatatgttggctgctattacacaaactttgaaccagtgcacc
agaccagacatggcaaccccagctgccctcgccctacaaggactacaggagctgtgccgg
gcagaggtagtggacatcatctcaacatggaggcttcttgggcctgagctcagctgtgaa
tcccgtccactgatggtcaaagctgtagctgagcttctggctctggttccccggctcact
gcaaagtcggaggggtatgagaaactgaaagaggaggtggtcagctttctctggaattat
gccctgagcaagcaggatccagaggtggccagctgtggctacagggctttggcagatttt
cctgaggcagcccacacaataactcttcttcctgaggcagccaggccagcttcgaagctc
cctgaagatgagggggaggaggaaaagggggaggagaaagaggaagaggagaaggatctc
tccattccaggatcttcttacgtgaagctgatggctctcacccatgtctctgttctccca
gcgtttgagctcttcttgacgtcactggtgaagcaggagatgagccagatgccacgtggg
gtgtacttctctgccctgaggggggggaacctgcgttcagaccagggtaaaacagtggca
ggaatcccaacattcatgctgaggagctacgagaaaaacaagcagcctgggctgaagcct
ggactagcagctggactgctgctcagttatgagttgcctgtgcagtccgaccgcaacggc
aaaccgattgatcgcttcctcatcagccgcagccgcagctaccagcagaccctgacagcc
ctcattcatgaggtgaatattcagccgtctgaatggcacagagccctcctcttaccccag
gcctggaggggttttatgagccgagctttccatgttgtattacagggtcgacgtgccgac
ttggagataaaacagaagcaaggcaaagagaacccagaggagctgcagtacaaatggcac
tgtgcctggctatgggccagagatcagctagcagatgccatcaaagttgctacaaaggac
agtcctgtagttcaggggaactccatcctggctttgagcggcctggcagctgtcctcgcc
aaatatgagagcaacctgcctgctgatagcgacggcagcctcggggctggaccagagttt
gtgcccacagccagctggttggccatggtgctggagacgctgctcagcatcatcagcagc
agctataaggccagaggacaagttttcccatggttcctgcatcgttcctactcgggtgag
aacacagcgagtgccatcgctcgctcctgtgccagcctggcgctctccttgctggttcct
gtgctggtggtgtggcagagggacggcctggtccaggtgctgtcagcactgcaggccggt
ctgccgggctcacccaccgctgatgactcccaggctgtccagttccactccggcctcgcg
ctgggcatggtgctgtccagtctgcaccaccaacgcctcggcgacgtctctgtgcagaag
gatgctaatgttcttctcagttctctggatgctctggagagttgctccttcaaccccaac
ctggaatacaatactggctgtatgttgggtctgggactggtgctggcatctctgtgcaga
agtggacagaaggagcaacacgtccgtgtcacccaaactctggacaaactactgtccaac
ctgcaggacagtagtggacagggacgcatgctccaggaggtattggcgtacactgtggca
tgtgtgggcatctcagctttcgatgcaggcctcatagatggtgccaaggctgaggaggtc
atgaacactctgcgcaccctgaccgaggagagccagcagaccccagggttctcccttgct
ctagggttggtggtccatggcctgtcactgtccggtcatggtaaagcggaggacatccac
cctcgactgctggctgcctggatcaagatcttactggcagaaggttgtcccactatgcag
cgactggctgctgtgaacggcttggtggctttagtgggatctgagagttacctcattcag
ctcaaaagtgatttggagctttccacccagcagcagaacagactgaatgaggttattcga
gccatcacgcaaatcataacattctcaggagccattggcttgcagtccaactgcgcctgt
ctggtggctcatttgcatttggcccacatgtccaccagccacagtcacacagcagttcct
caggacttcagttacctctcagagaaaagtgtcatcagatccatcattgacttcatctca
gaggctgaaaagaaaggtccagaattctgtcctccagctctggttaagactgctctgacc
ccgctggcatcagttggagccagtttccagtacccacccattaactggagcgctgtgctg
tctcctctgatgaggctcagcttcggagaggatgtccagcatcagtgtgtggtactggca
gcgtgtcaagctcagtcctctcagagtgcgtctctttttctgggctcctggctgtcaccg
ccgcttgtgcacagtctcagtcaacggaccagggctcacctgtacgagaacctgggcttg
tggatgaagcacattgccgaggacaagctccaggtcttcgcggagagtctgggcctgcag
cagttccaggaggaccttcgaccgcagcgcctgtccctgtgccgctcccttctgcagggc
ctcgctctggccatggccctcccaaacccgcctagtaactgctgggcaatcctctgttcc
accaccgagaagatcttcaccctcctgcccaaccaaatccaggatgatgaagtggatttg
tacatgggagtggccaaatgtctgtctgagatgtccgatacagaaattgatagaattgct
caagtcacagagactcagatggagaagacgtgtttcatcctggcttacctgacttcccaa
ggcagagttcccctgctgggtctcaatgacatcatcgctggcgtgctccgcggttggccg
agccaaagaatcggctggctcctccttcaaaccttttatcagtgtcgcctggccaccggc
tccaacacagttgtctccaaacgactggagtggctcctggagctgatgggccacatccga
aatgttgcctacggtgcaacctctgtccaatgtggagacaccagactggccacagacttc
ctgttccaggtctttgctgctgctgtagtttcctggggtgaccatttcatgcccttcctg
ctcggcatcagggcccagtggttaccatggcatcagggctccaggcctcgagctctacaa
cacagtctgtacggacaggagtctctcactgaacatgccctgccgcagtgcctgctggga
gtgccccacagcttgactctgcttctgaacaaagagccctggagcagccagatacaaaag
ttcatagactggtttctcagcataacagaaagtcctgagcagagtgtgtcaactgcaacc
ctcagcacagccaaagctgctctgttggccctgaagtactctgctgagttcaagaggaaa
actgtgtggaccagagcttatggctggtag
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integrated database retrieval system
